View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20710_low_9 (Length: 300)
Name: NF20710_low_9
Description: NF20710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20710_low_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 37246069 - 37245917
Alignment:
| Q |
147 |
gagataccttctttcaatttcatcccaacattnnnnnnncattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatga |
246 |
Q |
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| T |
37246069 |
gagatacattctttcaatttcatcccgacat-caaaaaacattctcaatgaaaacaattgactgtgaaatttaaggactcgcgaaatttgcaatccatga |
37245971 |
T |
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| Q |
247 |
gtgaatcaaaatattgcatcgttcccaagctcgacgatttggaatttggatcaa |
300 |
Q |
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| T |
37245970 |
gtgaatcaaaatattgcatcgttcccaagcttgacgatttggaatttggatcaa |
37245917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 37246118 - 37246070
Alignment:
| Q |
5 |
atgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
53 |
Q |
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| T |
37246118 |
atgtatcacacaagattgtgatcgtgagaatgcaaaaaaggaaaatctt |
37246070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 27664555 - 27664523
Alignment:
| Q |
245 |
gagtgaatcaaaatattgcatcgttcccaagct |
277 |
Q |
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| T |
27664555 |
gagtgaatcaaaatattgcatcgttcccaagct |
27664523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 4261313 - 4261210
Alignment:
| Q |
186 |
cattctcaatgataacaattgactgtgaaatttaaggactcgtgaaatttgcaatccatgagtgaatcaaaatattgcatcgttcccaagctcgacgatt |
285 |
Q |
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| T |
4261313 |
cattctcaatgaaaacgattgattgtgcaatttgaggactcgccagattaggaatccaagaatgaatcaagttattacatcgttcccaagcctaacgatt |
4261214 |
T |
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| Q |
286 |
tgga |
289 |
Q |
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|||| |
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| T |
4261213 |
tgga |
4261210 |
T |
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