View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20711_low_1 (Length: 325)
Name: NF20711_low_1
Description: NF20711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20711_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 34167149 - 34166830
Alignment:
| Q |
1 |
tcatcatgcctaggacgcaacattttagtttgtacctttactgatgggtnnnnnnnncacatttatcaggttataatatcatcctaggtttgagtctaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167149 |
tcatcatgcctaggacgcaacattttagtttgtacctttactgatgggtaaaaaaaacacatttatcaggttataatatcatcctaggtttgagtctaag |
34167050 |
T |
|
| Q |
101 |
tcgtccccgacaaactggcttaaatgctgaggattgtctaccctttataagcnnnnnnnnagtccatttctctagtaggatcacgacaaccttctaattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34167049 |
tcgtccccgacaaactggcttaaatgctgaggattgtctaccctttataagcttttttttagtccatttctctagtaggatcacgacaaccttctaattt |
34166950 |
T |
|
| Q |
201 |
cactcaagaaataaattacgtcattggaaagtttaattagctaaaaattcataagttggacagactctcccagtgtagagctaaaagttccagactcttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34166949 |
cactcaagaaataaattacgtcattggaaagtttaattagctaaaaattcataagttggacatactctcccagtgtagagctaaaagttccagactcttg |
34166850 |
T |
|
| Q |
301 |
cattctctgttcgtctctct |
320 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
34166849 |
cattctctgttcttctctct |
34166830 |
T |
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