View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20712_high_11 (Length: 453)
Name: NF20712_high_11
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 54980307 - 54980720
Alignment:
| Q |
19 |
catacaaatggataaagcttctgttcttggagaagatataaggtacttgaagcaaacgaataaaactgtggaacatgttgttattgtgtagaaaaactca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980307 |
catacaaatggataaagcttctgttcttggagaagatataaggtacttgaagcaaacgaataaaactgtggaacatgttgttattgtgtagaaaaactca |
54980406 |
T |
|
| Q |
119 |
acttggaataaattctcagctgagttacctttggaaatctcagaagcgtcttctttggtattgattcagttaagttcgaataaaattttcggtcacatgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980407 |
acttggaataaattctcagctgagttacctttggaaatctcagaagcttcttcttcggtattgattcagttaagttcgaataaaattttcggtcacatgc |
54980506 |
T |
|
| Q |
219 |
cagaaggtataggaaaatttaagaaactaactagtcttactttgtataagaacaatctttctggtgttctacctgattctataggttcttgtgtttctta |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54980507 |
cagaaggtataggaaaattgaagaaactaactagtcttactttgtataagaacaatctttctggtgttctacctgattctataggttcttgtgtttctta |
54980606 |
T |
|
| Q |
319 |
taaaccttgctggaaactctatttctggtgtaatttcaactggtatggattctttgcttacccttaattcatcggatttgtctttaaacaagttttctga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54980607 |
taaaccttgctggaaactctatttctggtgtaatttcaactggtatggattctttgcttacccttaattcattggatttgtctttaaacaagttttctga |
54980706 |
T |
|
| Q |
419 |
tgagattccataaa |
432 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54980707 |
tgagattccataaa |
54980720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 129 - 435
Target Start/End: Original strand, 2398801 - 2399115
Alignment:
| Q |
129 |
aattctcagctgagttacctttggaaatctcagaagcgtcttctttggtattgattcagttaagttcgaataaaattttcggtcacatgccagaaggtat |
228 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||| ||||| ||||||||| || ||| ||| |
|
|
| T |
2398801 |
aattctcaggtgagttaccaatggaaatctcagaagctagttctttggtttcaattcagttaagttcgaatagaatttccggtcacataccggaaactat |
2398900 |
T |
|
| Q |
229 |
aggaaaatttaagaaactaactagtcttactttgtataagaacaatctttctggtgttctacctgattctataggttcttgtgtt--tctta------ta |
320 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||| |||||||||||| ||||| || |
|
|
| T |
2398901 |
aggcaaattgaagaaactaactagtcttactttgaataacaacaatgtttctggtattctacctgattctattggttcttgtgtttctcttaatgaagta |
2399000 |
T |
|
| Q |
321 |
aaccttgctggaaactctatttctggtgtaatttcaactggtatggattctttgcttacccttaattcatcggatttgtctttaaacaagttttctgatg |
420 |
Q |
| |
|
||| | |||| ||| |||||||||||||||||| ||||| |||| | |||||||| |||||||||||||| | | ||||||| |||||||||||||| || |
|
|
| T |
2399001 |
aacttagctgaaaattctatttctggtgtaattccaactagtattggttctttgcctacccttaattcattgaacttgtcttcaaacaagttttctggtg |
2399100 |
T |
|
| Q |
421 |
agattccataaagtt |
435 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
2399101 |
agattccatcaagtt |
2399115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 2377458 - 2377513
Alignment:
| Q |
19 |
catacaaatggataaagcttctgttcttggagaagatataaggtacttgaagcaaa |
74 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
2377458 |
catacagatggacaaagcttctgttcttggagaagctataaggtacttaaagcaaa |
2377513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University