View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_high_13 (Length: 422)
Name: NF20712_high_13
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 46913781 - 46913384
Alignment:
| Q |
1 |
agaatgataaagaggaggaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagata |
100 |
Q |
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| T |
46913781 |
agaatgataaagaggaggaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagata |
46913682 |
T |
|
| Q |
101 |
gcataagagaagttcatgaagataatcccaatcattagtaacatcaaccacttgttgttgagattgaatcatttcctgcatagaacggaggaaatcaacg |
200 |
Q |
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| T |
46913681 |
gcataagagaagttcatgaagataatcccaatcgttagtaacatccaccacttgttgttgagattgaatcatttcctgcatagaacggaggaaatcaacg |
46913582 |
T |
|
| Q |
201 |
taagggtttacagaatattttggcaccctcttcacactacctcctcttggtatcaacgagttattacagggtagagtgtcgttggagggagactctgtga |
300 |
Q |
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| T |
46913581 |
taagggtttacagaatattttggcaccctcttcacactacctcctcttggtatcaacgagttattacagggtagagtgtcgttggagggagactctgtga |
46913482 |
T |
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| Q |
301 |
tggaattggagctgcctggggaggagaagaagaaccgttgggaggcgaagacggaagaaaagtcaggtggtggaagctccgtggtgtcgtagaaatag |
398 |
Q |
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| T |
46913481 |
tggaattggagctgcctggggaggagaagaagaaccgttgggaggcgaagacggaagaaaagtcaggtggtggaagctccgtggtgtcgtagaaatag |
46913384 |
T |
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