View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_high_17 (Length: 335)
Name: NF20712_high_17
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 7458304 - 7458577
Alignment:
| Q |
20 |
gtttgtgtgcatgggagaggggtgcacagaattccaaataaacataatgccaagnnnnnnnnnnnnnnnncctatttggaatatttatagggttgaacct |
119 |
Q |
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| T |
7458304 |
gtttgtgtgcatgggagaggggtgcacacaattccaaataaacataatgccaagtttttctttttcttttcctatttggaatatttatagggttgaacca |
7458403 |
T |
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| Q |
120 |
agtatgagtatatatgctaatgctactggtcccgattcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacctt |
219 |
Q |
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| T |
7458404 |
agtatgagtatatatgctaatgctactggtcccgattcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacttt |
7458503 |
T |
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| Q |
220 |
tgnnnnnnnattgcaggaagtaatataactcaaatacagtgcacataacaccaaaaacgaaaccctacctaata |
293 |
Q |
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| T |
7458504 |
tgtttttttattgcaggaagtaatataactcaaatacagtgcacataacaccaaaaacgaatccctaccaaata |
7458577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 292 - 323
Target Start/End: Original strand, 7458859 - 7458890
Alignment:
| Q |
292 |
tatgttttctttataacttcattcttaatatt |
323 |
Q |
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| T |
7458859 |
tatgttttctttataacttcattcttaatatt |
7458890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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