View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20712_high_18 (Length: 329)
Name: NF20712_high_18
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 52998274 - 52997954
Alignment:
| Q |
1 |
ttaacttctgattagttcgttgcagattagttcattccaactgtattctcttatgttagttagcaaaa-gattaaatatagctgtatataaaagcttcct |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
52998274 |
ttaacttctgattagttcgttgcaggttagttcattccaactgtattctcttatgttagctagtaaaaagattaaatatagctgtacataaaagcttcct |
52998175 |
T |
|
| Q |
100 |
gtacattgtatatacttcaatatgacaatagttttctcctaaaagttaaagatccgtttgattgtaatgcagacggatccgataagaaaaatttatatga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52998174 |
gtacattgtatatacttcaatatgacaatagttttctcctaaaagttaaagatccgtttgattgtaatgtagacggatccgataagaaaaatttatatga |
52998075 |
T |
|
| Q |
200 |
gtagaaatattaaacttttatctcttgtcagaaag------aaagnnnnnnnntactaaacttttatctttacttgtatttgaggcgcatttcaccttga |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998074 |
gtagaaatattaaacttttatctcttgtcagaaagaaaaaaaaaaaaaaaaaatactaaacttttatctttacttgtatttgaggcgcatttcaccttga |
52997975 |
T |
|
| Q |
294 |
aactgcccaaaagatgaatat |
314 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
52997974 |
aacagcccaaaagatgaatat |
52997954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University