View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_high_2 (Length: 747)
Name: NF20712_high_2
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 296 - 732
Target Start/End: Original strand, 32626398 - 32626838
Alignment:
| Q |
296 |
acaaaaatccgtgtgtatccatgagacacaaaatgatatgtttaaaatgaatatttaatttcaactggattcaaacatttaatctgaagacgattttcaa |
395 |
Q |
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| T |
32626398 |
acaaaaatccgtgtgtatccatgtgacacaaaatgatatgtttaaaatgaatatttaatctcaactggattcaaacatttaatctgaagatgatttttaa |
32626497 |
T |
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| Q |
396 |
attgtcataaattgtatactaagacaaaatgtctttaagttagttcaaaatcggcttaatagggatttaaaaactagcttaaaattcaatttctgcacta |
495 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
32626498 |
attgtcataaaccgtatactaagacaaaacgtctttaagttagttcaaaaccgacttaaaagggatttaaaaactaacttaaaattcaatttctacacta |
32626597 |
T |
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| Q |
496 |
gggatacataattttatcttacaatcaagagcatatatcacaactagtgagtagtgacatctaagtttttattcctatannnnnnnccatcataacattt |
595 |
Q |
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| T |
32626598 |
gggatacataattttatcttacaatcaagagcatatatcacaactagtgagtagtgacatctacgtttttattcctatattttttttcatcataacattt |
32626697 |
T |
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| Q |
596 |
tctaactaaatact----------------------agccttataactttgaatattttgaaccaaaatataaaccttaaccaaaaatgttcttgctcat |
673 |
Q |
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| T |
32626698 |
tctaactaaatactagctaggaagataatgctaactagccttataactttgaatattttg------------------aaccaaaaatgttcttgctcat |
32626779 |
T |
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| Q |
674 |
gatcttttagtcaataatatggtgatattgatgaacctagttctctctttagagtttcg |
732 |
Q |
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| T |
32626780 |
gatcttttagccaataatatggtgatattgatgaacttagttctccctttagagtttcg |
32626838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 32626151 - 32626325
Alignment:
| Q |
12 |
atgaagctatagagc-atgtaaacccttttggatggattgccaaagcagaaa-gtatcatataaatatgttttactttgtttcatatttattatataatg |
109 |
Q |
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||||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626151 |
atgaaactatagagctatgtaaaccctcttggatggattgccaaagcagaaaagtatcatataaatatgttttactttgtttcatatttattatataatg |
32626250 |
T |
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| Q |
110 |
tagatctttttcttagtcgtgaactttatctttgaatcacaacaagataaggtgattgatgttgatgagtaaaag |
184 |
Q |
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| T |
32626251 |
tagatctttttcttaggcgtgaactttatctttgaatcacaacaagataaggtgattgatgttgatgaataaaag |
32626325 |
T |
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