View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20712_high_20 (Length: 309)

Name: NF20712_high_20
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20712_high_20
NF20712_high_20
[»] chr3 (2 HSPs)
chr3 (171-309)||(38935993-38936131)
chr3 (9-72)||(38936230-38936293)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 171 - 309
Target Start/End: Complemental strand, 38936131 - 38935993
Alignment:
Q  171 tgaatcattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38936131 tgaaccattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat 38936032  T
Q  271 attctcaagctgcacattctctggcaaagcaattctgct 309  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  38936031 attctcaaactgcacattctctggcaaagcaattctgct 38935993  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 38936293 - 38936230
Alignment:
Q  9 agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38936293 agcacagacagctgcgccataacacaagtgacttccctccataatagagaggcttcctcacaac 38936230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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