View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20712_high_23 (Length: 300)
Name: NF20712_high_23
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 26845356 - 26845626
Alignment:
| Q |
9 |
agcagagaatgtttcaattttcaatcaatttgatcatcaatttttcagtactaattctttgtaattaaaacttattagtagtaactctcctctatgagta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845356 |
agcagagaatgtttcaattttcaatcaatttgatcatcaatttttcagtactaattctttgtaattaaaacttattagtagtaactctcctctatgagta |
26845455 |
T |
|
| Q |
109 |
atcttcctcttggtctaaaatgactcaatctatcccttgtcgattattctactttagctcctatcaatctacaacaacactacatgatactcaaggtcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845456 |
atcttcctcttggtctaaaatgactcaatctatcccttgtcgattattctactttagctcctatcaatctacaacaacactacatgatactcaaggtcca |
26845555 |
T |
|
| Q |
209 |
catgcaaattctcaattcaaccaaattgagaaaatggaacttgaggaaaaaattagggtttgggttcggtc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845556 |
catgcaaattctcaattcaaccaaattgagaaaatggaacttgaggaaaaaattagggtttgggttcggtc |
26845626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 73 - 279
Target Start/End: Original strand, 26848588 - 26848794
Alignment:
| Q |
73 |
ttaaaacttattagtagtaactctcctctatgagtaatcttcctcttggtctaaaatgactcaatctatcccttgtcgattattctactttagctcctat |
172 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26848588 |
ttaaaacttattaggagtaactcttctctatgagtaatcttcctcttggtctaaaatgactcaatctatcccttgtcgattattctacttcagctcctat |
26848687 |
T |
|
| Q |
173 |
caatctacaacaacactacatgatactcaaggtccacatgcaaattctcaattcaaccaaattgagaaaatggaacttgaggaaaaaattagggtttggg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
26848688 |
caatctacaacaacactacatgatactcaaggtccacatgcaaattctcaattcaaccaaattgagaaaatgaaatttgaggaaaaaattagggtttagg |
26848787 |
T |
|
| Q |
273 |
ttcggtc |
279 |
Q |
| |
|
|| |||| |
|
|
| T |
26848788 |
tttggtc |
26848794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University