View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20712_high_26 (Length: 269)

Name: NF20712_high_26
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20712_high_26
NF20712_high_26
[»] chr2 (2 HSPs)
chr2 (1-254)||(37797398-37797651)
chr2 (57-98)||(24992441-24992482)
[»] scaffold0163 (1 HSPs)
scaffold0163 (57-91)||(19288-19322)
[»] chr3 (2 HSPs)
chr3 (57-91)||(2158638-2158672)
chr3 (57-91)||(40090225-40090259)
[»] chr1 (1 HSPs)
chr1 (57-91)||(20174733-20174767)
[»] scaffold0500 (1 HSPs)
scaffold0500 (57-98)||(9329-9370)
[»] scaffold0096 (1 HSPs)
scaffold0096 (57-98)||(52403-52444)
[»] scaffold0028 (1 HSPs)
scaffold0028 (57-98)||(85209-85250)
[»] chr7 (1 HSPs)
chr7 (57-98)||(610120-610161)
[»] chr6 (2 HSPs)
chr6 (57-98)||(8998234-8998275)
chr6 (57-98)||(9007403-9007444)
[»] chr5 (1 HSPs)
chr5 (57-98)||(725055-725096)
[»] chr4 (1 HSPs)
chr4 (57-98)||(115536-115577)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 37797651 - 37797398
Alignment:
Q  1 ttgtcatcttttgcaaacaagtacaagttgaaaaagatttgaaaattgcaataattagaagtgatcatggaggagagtttgaaaattcatcttttgaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37797651 ttgtcatcttttgcaaacaagtgcaagttgaaaaagatttgaaaattgcaatagttagaagtgatcatggaggagagtttgaaaattcatcttttgaaaa 37797552  T
Q  101 cnnnnnnnnncatgatttctcctctcccaggacaccataataaaatggagttgtataa-gctagaaagaaaaaatagatctcttcaagagataaccaaaa 199  Q
    |         ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  37797551 ctttttttt-catgatttctcctctcccaggacaccataataaaatgaagttgtataaagctagaaaggaaaaatagatctcttcaagagatgaccaaaa 37797453  T
Q  200 ccatgattaatgagaaaaaatgttccaactcactttaggacagaagctgcaaatg 254  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37797452 ccatgattaattagaaaaaatgttccaactcactttaggacagaagctgcaaatg 37797398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 24992441 - 24992482
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  24992441 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 24992482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 19288 - 19322
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatc 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  19288 agaagtgatcatggaggagaatttgaaaattcatc 19322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 2158638 - 2158672
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatc 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  2158638 agaagtgatcatggaggagaatttgaaaattcatc 2158672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 40090259 - 40090225
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatc 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  40090259 agaagtgatcatggaggagaatttgaaaattcatc 40090225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 20174733 - 20174767
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatc 91  Q
    |||||||||||||||||||| ||||||||||||||    
T  20174733 agaagtgatcatggaggagaatttgaaaattcatc 20174767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 9329 - 9370
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  9329 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 52403 - 52444
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  52403 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 52444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 85209 - 85250
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  85209 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 85250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 610120 - 610161
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  610120 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 610161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 8998234 - 8998275
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  8998234 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 8998275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 9007403 - 9007444
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  9007403 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 9007444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 725096 - 725055
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  725096 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 725055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 115536 - 115577
Alignment:
Q  57 agaagtgatcatggaggagagtttgaaaattcatcttttgaa 98  Q
    |||||||||||||||||||| ||||||||| | |||||||||    
T  115536 agaagtgatcatggaggagaatttgaaaatgcctcttttgaa 115577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University