View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_high_33 (Length: 206)
Name: NF20712_high_33
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 33315952 - 33315785
Alignment:
| Q |
19 |
aggaaagatacatttgagggtccttccggttcaagtaatgttcagaggtcatatccagtgctaacatgttcaaggtctggtctagaaggtaacaacaata |
118 |
Q |
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| T |
33315952 |
aggaaagatgcatttgagggtccttccggttcaagtaatgttcagaggtcatatccagtgctaacatgttcaaggtgtggtctagaaggtaaccacaata |
33315853 |
T |
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| Q |
119 |
ggttcggctgcactaatcaaggtgtgatgcctatgcctcccaattaggttccaccaccaccacctccc |
186 |
Q |
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| T |
33315852 |
ggttcggctgcactaatcaagctgtgatgcctatgcctcccaattaggttccaccaccaccacctccc |
33315785 |
T |
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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 38983980 - 38984150
Alignment:
| Q |
8 |
agaagcaaaggaggaaagatacatttgagggtccttccggttcaagtaatgttcagaggtcatatccagtgctaacatgttcaaggtctggtctagaagg |
107 |
Q |
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| T |
38983980 |
agaaacaaagaaggaaatatgcatatgagggtccttcctgttcaagtaatgtctgaaggtcacatccagtgcaaacatgttcaaggtgtggtctagaagg |
38984079 |
T |
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| Q |
108 |
taacaacaataggttcggctgcactaatcaaggtgtgatgcctatgcctcccaattaggttccaccaccac |
178 |
Q |
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| T |
38984080 |
tagccacaataggtttcgctgcactaatcaaggtgtgatgtctatgcctccccattggcctccaccaccac |
38984150 |
T |
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