View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_high_7 (Length: 472)
Name: NF20712_high_7
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 32337467 - 32337913
Alignment:
| Q |
17 |
agttatttccttctttttctcccaaaatgaggagaaaggttccatacttccatcatagaattaattccacgagaataaattattttcaaacaacaaatga |
116 |
Q |
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| T |
32337467 |
agttatttccttctttttctcccaaaatgaggagaaaggttccatacttccatcatagaattaattccacgagaataaattattttcaaacaacaaatga |
32337566 |
T |
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| Q |
117 |
taatttgtgtgtggatgcttcccatccctgcaatttcaggcataacaactcaatatttaaatgaggttgagtgcttcttcgattagaccaaagaaatttt |
216 |
Q |
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| T |
32337567 |
taatttgtgtgtggatgcttcccatccctgcaatttcaggcataacaactcaatatttaaatgaggttgagtgcttcttcgattagaccaaagaaatttt |
32337666 |
T |
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| Q |
217 |
agaaagatataattgaatttaatatttgagtatttcttttagtaatatttaaaccatgctaaaatttaatatcttcattttagaaattagttattt---a |
313 |
Q |
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| T |
32337667 |
agaaagatataattgaatttaatatttgagtatttcttttagtaatatttaaaccatgctaaaatttaatatcttcattttagaaattagttatttaaaa |
32337766 |
T |
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| Q |
314 |
cactatttgaattatttcttaaaaactatttaaatatatacactagtttacatgcagtgacattgtaaattttttctatgcatgaaaagtataaattttt |
413 |
Q |
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| T |
32337767 |
cactatttgaattatttctaaaaaactatttaaatatatacactaatttacatgcagtgacattgtaaattttttctatgcatgaaaagtataaattttt |
32337866 |
T |
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| Q |
414 |
tagacatattttaggaatttacctaaaactgtggtattatagatgat |
460 |
Q |
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| T |
32337867 |
tagacatattttaggaatttacctaaaaatgtggtattatagatgat |
32337913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 116
Target Start/End: Original strand, 32337213 - 32337242
Alignment:
| Q |
87 |
gagaataaattattttcaaacaacaaatga |
116 |
Q |
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| T |
32337213 |
gagaataaattattttcaaacaacaaatga |
32337242 |
T |
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