View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20712_high_8 (Length: 469)
Name: NF20712_high_8
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 27 - 461
Target Start/End: Original strand, 25540345 - 25540779
Alignment:
| Q |
27 |
tcgtaagcataaaatccttactgatattatagaaaaggagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540345 |
tcgtaagcataaaatccttactgatattatagaaaaggagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaa |
25540444 |
T |
|
| Q |
127 |
aatatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540445 |
aatatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagt |
25540544 |
T |
|
| Q |
227 |
tgcatttgttgcgagcactcgaatcctcaaagctaaaggactactaacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttc |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540545 |
tgcatttgttgcgagcactcgaatcctcaaagctaaaggactactaacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgtta |
25540644 |
T |
|
| Q |
327 |
ggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagtatgtgtacgtttcatatgcaactgtgttatctttaattgactctttca |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540645 |
ggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagtatgtgtacgtttcatatgcaactgtgttatctttaattgactctttca |
25540744 |
T |
|
| Q |
427 |
ttcgtagtcatgaagattggaaattactgatgatg |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
25540745 |
ttcgtagtcatgaagattggaaattactgatgatg |
25540779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 25517251 - 25517048
Alignment:
| Q |
64 |
gagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaattt |
163 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
25517251 |
gagccaacatcagaaaaaacttaataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaacgtatcagcagccaattt |
25517152 |
T |
|
| Q |
164 |
cactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaa |
263 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25517151 |
cactgaggaacgttacctattccatctatcatatttaccatta-aaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaaa |
25517053 |
T |
|
| Q |
264 |
ggact |
268 |
Q |
| |
|
||||| |
|
|
| T |
25517052 |
ggact |
25517048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 25524812 - 25525049
Alignment:
| Q |
29 |
gtaagcataaaatccttactgatattatagaaaaggagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaa |
128 |
Q |
| |
|
|||| ||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
25524812 |
gtaaacatgaaatcgttgctgatattatagaaaaggagccaacatcagaaaaaacttaataaaccataaaatctgaaaattataggagcgaatggtaaat |
25524911 |
T |
|
| Q |
129 |
tatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttg |
228 |
Q |
| |
|
||| ||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| || | | | | ||| ||||||||||||| |
|
|
| T |
25524912 |
tattagtaatcagtcaacgcatcatcaaccaatttcactgaggaatgttacctgttccatctatcatat------taaaaaaaaacggctcctagagttg |
25525005 |
T |
|
| Q |
229 |
catttgttgcgagcactcgaatcctcaaagctaaaggactacta |
272 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
25525006 |
catttgttgcgagcactcaaatcgtcaaagccaaaggactacta |
25525049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 287 - 461
Target Start/End: Original strand, 25534070 - 25534248
Alignment:
| Q |
287 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagt------at |
380 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
25534070 |
tgcttctaacaacatatttgtatat-aaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagtaactgaat |
25534168 |
T |
|
| Q |
381 |
gtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
461 |
Q |
| |
|
|||||| ||| ||||||||| |||| ||| |||||||||||| ||||| |||||||||| ||||| ||||| ||| |||| |
|
|
| T |
25534169 |
gtgtaccttttctatgcaactatgtt-tctctaattgactcttccattcatagtcatgaacattggcaattattgaagatg |
25534248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 272 - 461
Target Start/End: Complemental strand, 25516359 - 25516165
Alignment:
| Q |
272 |
aacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaa |
371 |
Q |
| |
|
|||| |||||| ||| | ||||||| |||||||||||| ||| |||| ||||||| ||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25516359 |
aactagatacaatgtagattctaactacatagttgtatctgacaggtgcatgttcagtagctggatgtgttcttaggaacctcgatgcatttgaaagtaa |
25516260 |
T |
|
| Q |
372 |
accaagt------atgtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
461 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| | | |||||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
25516259 |
accaagtaactgaatgtgtacctttcatatgcaaacatgtt-tttctaattgactcttcgattcatagtcatgaagtttggaaattactgatgatg |
25516165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 287 - 461
Target Start/End: Original strand, 25526068 - 25526246
Alignment:
| Q |
287 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaa------gtat |
380 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||| || | || |
|
|
| T |
25526068 |
tgcttctaacgacatatttgtatatgaa-ggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaacaaactaactgaat |
25526166 |
T |
|
| Q |
381 |
gtgtacgtttcatatgcaactgtgttatctttaattgactctttcattcgtagtcatgaagattggaaattactgatgatg |
461 |
Q |
| |
|
|||| | ||||||||||| || |||| ||| |||||||||||| ||||| |||||||||| ||||| ||||||||| |||| |
|
|
| T |
25526167 |
gtgtgcatttcatatgcagctatgtt-tctctaattgactcttccattcatagtcatgaacattggcaattactgaagatg |
25526246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 44461024 - 44461068
Alignment:
| Q |
214 |
cagctcctagagttgcatttgttgcgagcactcgaatcctcaaag |
258 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
44461024 |
cagctgctagagttgcatttgttgcaagcactccaatcctcaaag |
44461068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University