View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20712_low_1 (Length: 758)

Name: NF20712_low_1
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20712_low_1
NF20712_low_1
[»] chr7 (7 HSPs)
chr7 (215-747)||(8759387-8759920)
chr7 (449-634)||(11797887-11798073)
chr7 (11-152)||(8759182-8759324)
chr7 (252-444)||(25470614-25470801)
chr7 (287-439)||(23402045-23402198)
chr7 (287-435)||(49002446-49002595)
chr7 (385-445)||(4902641-4902701)
[»] chr3 (26 HSPs)
chr3 (215-442)||(5125370-5125597)
chr3 (215-445)||(54607802-54608026)
chr3 (217-445)||(11019630-11019858)
chr3 (217-445)||(42663989-42664217)
chr3 (11-152)||(54607597-54607739)
chr3 (15-152)||(5125169-5125307)
chr3 (251-442)||(29923035-29923227)
chr3 (251-442)||(29972188-29972380)
chr3 (252-444)||(48154355-48154542)
chr3 (34-152)||(11019446-11019565)
chr3 (281-445)||(36689668-36689829)
chr3 (253-401)||(47871176-47871325)
chr3 (449-514)||(5242530-5242595)
chr3 (81-133)||(47870738-47870790)
chr3 (242-377)||(12121188-12121328)
chr3 (287-445)||(32180418-32180577)
chr3 (326-447)||(31706485-31706606)
chr3 (287-420)||(38392320-38392454)
chr3 (74-125)||(40744311-40744362)
chr3 (242-280)||(43486211-43486249)
chr3 (256-320)||(435201-435264)
chr3 (261-408)||(4556944-4557092)
chr3 (355-418)||(7758129-7758192)
chr3 (392-443)||(23165291-23165342)
chr3 (403-444)||(20373027-20373068)
chr3 (79-132)||(43486145-43486197)
[»] chr5 (17 HSPs)
chr5 (219-441)||(26411984-26412207)
chr5 (252-444)||(8762864-8763051)
chr5 (252-444)||(13888300-13888487)
chr5 (240-441)||(12080405-12080593)
chr5 (34-152)||(26411796-26411915)
chr5 (242-420)||(33848039-33848218)
chr5 (76-142)||(12080568-12080634)
chr5 (325-444)||(3014702-3014820)
chr5 (242-415)||(33752405-33752579)
chr5 (249-425)||(10053782-10053953)
chr5 (304-445)||(25654588-25654728)
chr5 (55-120)||(41140292-41140356)
chr5 (354-444)||(21321040-21321130)
chr5 (353-446)||(36055541-36055634)
chr5 (81-132)||(33848232-33848283)
chr5 (403-444)||(23954556-23954597)
chr5 (403-444)||(24886467-24886508)
[»] scaffold0312 (1 HSPs)
scaffold0312 (220-448)||(8205-8434)
[»] chr1 (12 HSPs)
chr1 (220-448)||(422138-422367)
chr1 (231-444)||(28012868-28013083)
chr1 (231-323)||(7842335-7842427)
chr1 (370-444)||(7843091-7843165)
chr1 (287-445)||(47554977-47555136)
chr1 (354-449)||(5500643-5500738)
chr1 (392-443)||(42663232-42663283)
chr1 (246-296)||(17695267-17695316)
chr1 (378-444)||(26970835-26970901)
chr1 (287-426)||(15964322-15964462)
chr1 (353-417)||(16135612-16135676)
chr1 (385-443)||(10598206-10598264)
[»] chr2 (15 HSPs)
chr2 (226-439)||(59334-59548)
chr2 (252-444)||(6357008-6357201)
chr2 (217-448)||(43445217-43445457)
chr2 (252-444)||(7565482-7565671)
chr2 (252-442)||(32652592-32652777)
chr2 (293-444)||(41644101-41644253)
chr2 (287-445)||(19093676-19093835)
chr2 (55-132)||(58724-58803)
chr2 (287-445)||(6177996-6178155)
chr2 (287-420)||(19073574-19073708)
chr2 (242-315)||(27355145-27355218)
chr2 (242-315)||(45411951-45412024)
chr2 (286-445)||(18514399-18514559)
chr2 (292-419)||(34441573-34441701)
chr2 (56-132)||(43445543-43445627)
[»] chr4 (16 HSPs)
chr4 (449-599)||(8015191-8015342)
chr4 (252-444)||(14246379-14246572)
chr4 (217-408)||(5813397-5813587)
chr4 (215-436)||(22721927-22722126)
chr4 (252-444)||(5914938-5915125)
chr4 (372-444)||(37795138-37795210)
chr4 (242-342)||(28292430-28292532)
chr4 (353-416)||(17612623-17612686)
chr4 (353-436)||(9743876-9743959)
chr4 (258-320)||(47237449-47237511)
chr4 (379-444)||(47073065-47073130)
chr4 (385-444)||(28292363-28292422)
chr4 (403-444)||(3042999-3043040)
chr4 (403-444)||(4205364-4205405)
chr4 (403-452)||(7703889-7703938)
chr4 (403-444)||(36493479-36493520)
[»] chr8 (11 HSPs)
chr8 (251-443)||(1872582-1872774)
chr8 (292-445)||(4108582-4108736)
chr8 (287-420)||(3038627-3038761)
chr8 (386-444)||(30650903-30650961)
chr8 (292-420)||(23176479-23176608)
chr8 (287-418)||(7290941-7291073)
chr8 (392-443)||(5018555-5018606)
chr8 (353-440)||(18756339-18756426)
chr8 (385-443)||(6446181-6446239)
chr8 (403-444)||(5299716-5299757)
chr8 (403-444)||(37970289-37970330)
[»] chr6 (8 HSPs)
chr6 (252-444)||(4487724-4487911)
chr6 (256-444)||(25441684-25441867)
chr6 (215-299)||(18309160-18309243)
chr6 (285-441)||(18306552-18306709)
chr6 (217-319)||(26819709-26819812)
chr6 (353-444)||(11083826-11083917)
chr6 (353-420)||(4104305-4104372)
chr6 (353-420)||(30341505-30341572)
[»] scaffold0262 (1 HSPs)
scaffold0262 (242-342)||(11443-11544)
[»] scaffold0003 (1 HSPs)
scaffold0003 (242-320)||(107904-107982)
[»] scaffold0001 (1 HSPs)
scaffold0001 (244-320)||(65949-66025)
[»] scaffold0008 (1 HSPs)
scaffold0008 (405-442)||(267658-267695)


Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 215 - 747
Target Start/End: Original strand, 8759387 - 8759920
Alignment:
Q  215 caaacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgt 314  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  8759387 caaacaaaatgaacagatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggaccgatttgt 8759486  T
Q  315 aataagatatatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 414  Q
    | ||||||||||||| ||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759487 actaagatatatttaatcttacagtggtccatcaaaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 8759586  T
Q  415 aagtcattttcttgactacaccatagaagcctccataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaact 514  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8759587 aagtcattttcttggctacaccatagaagcccccataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaact 8759686  T
Q  515 aatggaagggttaatggaataaatcacaattaggacccaccacgatgtgattaagaaggaaaaagtaggataaaaatagggtttaaggtagaaaacttag 614  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||    
T  8759687 aatgaaagggttaatggaataaatcacaattaggacccaccactatgtgagtaagaatgaaaaagtaggataaaaatagggtttaaggtagaaaacatag 8759786  T
Q  615 taggatttagatatatagattttacaattttgtcaccttattcttaagagcccttactacaagctgttagtcactatctatcca-atattctttcaattt 713  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8759787 taggatttagatatatagattttacaattttgtcacctgattcttaagagcccttactacaagctgttagtcactatctatccatatattctttcaattt 8759886  T
Q  714 tgctcccttgatttacctatggcaaacattgatg 747  Q
    |||||||||| |||||||||||||||||||||||    
T  8759887 tgctcccttggtttacctatggcaaacattgatg 8759920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 449 - 634
Target Start/End: Original strand, 11797887 - 11798073
Alignment:
Q  449 ataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaactaatggaagggttaatggaataaatcacaattagg 548  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  11797887 ataagtataatggattgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaactaatgaaaggattaatagaataaatcacaattagg 11797986  T
Q  549 acccaccacgatgtgattaagaag-gaaaaagtaggataaaaatagggtttaaggtagaaaacttagtaggatttagatatatagat 634  Q
     |||||||| ||||||||||| || ||||||||||| || |||||||||||| ||||| | | ||||||||||||||||||||||||    
T  11797987 gcccaccactatgtgattaaggagtgaaaaagtagggtacaaatagggtttagggtaggagatttagtaggatttagatatatagat 11798073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 8759182 - 8759324
Alignment:
Q  11 cacagacaaggggtgtaagtatgtaaatccctaatccgggttagcaaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagagg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  8759182 cacagacaaggggtgtaagtatgtaaatccctaatccgggttagcaaaatgtataatttaggttagcaaaatccccttctgcagatgaagaataaagagg 8759281  T
Q  111 atgattaaaaatgatttaatttta-cataaaatctctttctgc 152  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  8759282 atgattaaaaatgatttaattttagcataaaatctccttctgc 8759324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 444
Target Start/End: Original strand, 25470614 - 25470801
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      |||| |||||||| || ||||||||||||||||  || | |||||| |||  ||||| | |||||    
T  25470614 attttaaataaaataagttaataaatcaa------ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcaca 25470707  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||| ||||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  25470708 aagacactcgctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 25470801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 287 - 439
Target Start/End: Complemental strand, 23402198 - 23402045
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| |||||||||||||||||| |||| | |||||| ||| |||||| |  ||  | ||||||||||||||| |||||  || ||||  |    
T  23402198 ttaatattttgtacgatgactgatttgtaataggataaagtttagttttagagtggtcccccaacatgacactagctgacataacatcggcagttatact 23402099  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccata 439  Q
    |||||||||| ||||| ||||||| |||||||||| ||| |||||| |||||||    
T  23402098 attggctaaacaaaataacttttttaaaaaagtcagttttttgactgcaccata 23402045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 435
Target Start/End: Original strand, 49002446 - 49002595
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| || |||||||||||||| || || | |||||| ||| |||||| |  ||  | |||| ||||||  |||||||| ||||||||  |    
T  49002446 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcaggacattagctgctatgacatcgacaattatact 49002545  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacac 435  Q
    ||||  |||||||||| |||||||||||||| ||| |||  |||||||||    
T  49002546 attgattaaataaaataactttttcaaaaaaatcagttttctgactacac 49002595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 4902641 - 4902701
Alignment:
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    ||||| ||||| ||||| |||||||||||||||||| |||  ||||| |||||||||||||    
T  4902641 tattgactaaacaaaataactttttcaaaaaagtcaattttctgacttcaccatagaagcc 4902701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 215 - 442
Target Start/End: Original strand, 5125370 - 5125597
Alignment:
Q  215 caaacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgt 314  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  5125370 caaacaaaatgaacagatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaggactgatttgt 5125469  T
Q  315 aataagatatatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 414  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||    
T  5125470 aataagatatatttagtcttacagtggtccatcacaaagacactagctgacatggcattaacaattatgttattggttaaataaaataactttttcaaaa 5125569  T
Q  415 aagtcattttcttgactacaccatagaa 442  Q
    ||||||||||||||||||||||||||||    
T  5125570 aagtcattttcttgactacaccatagaa 5125597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 215 - 445
Target Start/End: Original strand, 54607802 - 54608026
Alignment:
Q  215 caaacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgt 314  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  54607802 caaacaaaatgaacagatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtaagaagactgatttgt 54607901  T
Q  315 aataagatatatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 414  Q
    ||||||||||||||||||||| |||||| | ||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54607902 aataagatatatttagtcttacagtggtccatcacaaagacac------acatggcatcaacaattatgttattggctaaataaaatgactttttcaaaa 54607995  T
Q  415 aagtcattttcttgactacaccatagaagcc 445  Q
    ||||||||||||| |||||||||||||||||    
T  54607996 aagtcattttcttaactacaccatagaagcc 54608026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 217 - 445
Target Start/End: Original strand, 11019630 - 11019858
Alignment:
Q  217 aacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaa 316  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| || || |||||||||||||    
T  11019630 aacaaaatgaacagatgaagaacaaaaatgaatttattttaaattaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgtaa 11019729  T
Q  317 taagat-atatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaa 415  Q
    |||||| | ||||||||||| |||||| | ||||||||||||||||| |||| |||| |||||| ||| |||||||||||||||||||||||||||||||    
T  11019730 taagataaaatttagtcttagagtggtccatcacaaagacactagctaacattacat-aacaatcatgctattggctaaataaaatgactttttcaaaaa 11019828  T
Q  416 agtcattttcttgactacaccatagaagcc 445  Q
    | ||||||| ||||||||||||||||||||    
T  11019829 aatcatttttttgactacaccatagaagcc 11019858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 217 - 445
Target Start/End: Complemental strand, 42664217 - 42663989
Alignment:
Q  217 aacaaaatgaacatatgaagaacaaaaa-tgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgta 315  Q
    ||||||||||||| ||||| |||||||| ||||||||||| ||||| ||| |||||||||||||||||||| |||  ||||||| || ||||||||||||    
T  42664217 aacaaaatgaacaaatgaataacaaaaaatgattttattt-aaatacaatcagttaataaatcaaaagtaaataat-ttttgtacgaggactgatttgta 42664120  T
Q  316 ataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 414  Q
    ||||  || | |||||||||| |||||||  ||||||||||||||||||||||||||||||||| |||  ||||| ||||||||||| |||||||| |||    
T  42664119 ataaagtaaaatttagtcttacagtggtttatcacaaagacactagctgacatgacatcaacaactatactattgactaaataaaataactttttctaaa 42664020  T
Q  415 aagtcattttcttgactacaccatagaagcc 445  Q
    |||||||||||||||||||||||||||||||    
T  42664019 aagtcattttcttgactacaccatagaagcc 42663989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 54607597 - 54607739
Alignment:
Q  11 cacagacaaggggtgtaagtatgtaaatccctaatccgggttagcaaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagagg 110  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  54607597 cacaaacaaggggtgtaagtatgtaaatccctaatctgggttagcaaaatgtataatttaggttagcaaaatccccttctgcagatgaagaataaagagg 54607696  T
Q  111 atgattaaaaatgatttaatttta-cataaaatctctttctgc 152  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  54607697 atgattaaaaatgatttaattttagcataaaatctccttctgc 54607739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 5125169 - 5125307
Alignment:
Q  15 gacaaggggtgtaagtatgtaaatccctaatccgggttagcaaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagaggatga 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  5125169 gacaagggatgtaagtatgtaaatccctaatccgggttagcaaaatgtataatttaggttagcaaaatccccttctccagatgaagaataaagaggatga 5125268  T
Q  115 ttaaaaatgatttaatttta-cataaaatctctttctgc 152  Q
     ||||||||||||||||||| ||||||||||| ||||||    
T  5125269 ataaaaatgatttaattttagcataaaatctccttctgc 5125307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 251 - 442
Target Start/End: Complemental strand, 29923227 - 29923035
Alignment:
Q  251 tattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcac 349  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||  |  ||| |||||||||||  || | |||||| |||||||||| | ||||    
T  29923227 tattttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcac 29923128  T
Q  350 aaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaa 442  Q
    ||||||   |||||||||| |||||| || |||  |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29923127 aaagacgtcagctgacatggcatcaagaactatactattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 251 - 442
Target Start/End: Complemental strand, 29972380 - 29972188
Alignment:
Q  251 tattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcac 349  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||  |  ||| |||||||||||  || | |||||| |||||||||| | ||||    
T  29972380 tattttaaataaaataagttaataaatcaaaggttattaatattttgtacaagaacttatttgtaataaagtaaaatttagttttatagtggtccatcac 29972281  T
Q  350 aaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaa 442  Q
    ||||||   |||||||||| |||||| || |||  |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29972280 aaagacgtcagctgacatggcatcaagaactatactattagttaaataaaatgactttttaaaaaaagtcattttcttgactacaccatagaa 29972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 252 - 444
Target Start/End: Complemental strand, 48154542 - 48154355
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      ||||  ||||||| || ||||||||||||||||  || | |||||| ||| |||||| | |||||    
T  48154542 attttaaataaaataagttaataaatcaa------ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcaca 48154449  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| ||| ||||| |||| |||||| |||| ||||||| ||||| |||||||||||||| || ||| ||||||||||||    
T  48154448 aagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgatttttttaaaaaagtcatttttttaactgcaccatagaagc 48154355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 11019446 - 11019565
Alignment:
Q  34 taaatccctaatccgggttagcaaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagaggatgattaaaaatgatttaatttt 133  Q
    |||||||||||   ||||||||||||||||||||||||  |||||||||||||||   || |||||||| |||||||||||||||||||||||||||||     
T  11019446 taaatccctaacttgggttagcaaaatgtataatttaggttagcaaaatccccttacacaaatgaagaagaaagaggatgattaaaaatgatttaatttg 11019545  T
Q  134 a-cataaaatctctttctgc 152  Q
    | ||||||||||| ||||||    
T  11019546 agcataaaatctccttctgc 11019565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 36689668 - 36689829
Alignment:
Q  281 aagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaat 379  Q
    |||||||||| |||||||| || |||| |||||||||||  || | |||||| |||  ||||| | |||  ||||||||||||||||||||||||||||     
T  36689668 aagtaattaatattttgtatgaggacttatttgtaataaagtaaagtttagttttacggtggtccatcaacaagacactagctgacatgacatcaacaac 36689767  T
Q  380 tatgttattggctaaataaaatgactttttc-aaaaaagtcattttcttgactacaccatagaagcc 445  Q
    |||||||||||     | ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  36689768 tatgttattgg-----ttaaatgactttttcaaaaaaagtcattttcttgacaacaccatagaagcc 36689829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 47871176 - 47871325
Alignment:
Q  253 ttttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaa 351  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| |   || | |||| ||||| |||| | |  ||  |    
T  47871176 ttttaaataaaataagttaataaatcaaaagtaattaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagca 47871275  T
Q  352 agacactagctgacatgacatcaacaattatgttattggctaaataaaat 401  Q
     |||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  47871276 ggacactagttgacatgacatcaacagttatattattggctaaataaaat 47871325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 5242530 - 5242595
Alignment:
Q  449 ataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaact 514  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  5242530 ataagtataatggattgttactaattgagggaaaataaaagggttattggtggctagtaactaact 5242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 47870738 - 47870790
Alignment:
Q  81 atccccttctgcagatgaagaataaagaggatgattaaaaatgatttaatttt 133  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  47870738 atccccttctgcagatgaagaagaaagaggataattaaaaatgatttaatttt 47870790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 377
Target Start/End: Complemental strand, 12121328 - 12121188
Alignment:
Q  242 aaatgattttattttaaataaaataagttaat----aaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttat 336  Q
    ||||||||| |||||||||| |||||||||||    ||||||||||||||||| ||||||||  | || | |||||||||||| || | |||||||||||    
T  12121328 aaatgatttaattttaaatataataagttaataaataaatcaaaagtaattaatattttgtataaggagttatttgtaataaggtaaagtttagtcttat 12121229  T
Q  337 agtggttcttcacaaagacactagctgacatgacatcaaca 377  Q
    ||||||||  ||  |  ||| ||||||||||| ||||||||    
T  12121228 agtggttcaccatcagaacattagctgacatggcatcaaca 12121188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 287 - 445
Target Start/End: Complemental strand, 32180577 - 32180418
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| || ||||||||||||||||| || | |||||| ||| |||||| |  ||  | ||||||||| |||||||||||| || ||||  |    
T  32180577 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagccgacatgacatcagcagttatact 32180478  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    |||||||||| ||||| |||||| |||| |||||| |||  |||||||| | ||||||||    
T  32180477 attggctaaacaaaataacttttccaaagaagtcaattttctgactacatcgtagaagcc 32180418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 447
Target Start/End: Complemental strand, 31706606 - 31706485
Alignment:
Q  326 tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttc 425  Q
    |||||||||| |||||| | |||  | |||||||| | |||||||||||| ||||||  |||||  |||| ||||| |||||||||||||||||| |||     
T  31706606 tttagtcttagagtggtccatcaacaggacactagttaacatgacatcaaaaattatactattgattaaacaaaataactttttcaaaaaagtcagtttt 31706507  T
Q  426 ttgactacaccatagaagcctc 447  Q
    |||||| |||| | ||||||||    
T  31706506 ttgactgcaccgttgaagcctc 31706485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 38392454 - 38392320
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| ||||||||||||||||||||||||||||  || | |||||| ||| |  |||||  ||  | |||||||||||| |||| |||| || |||| ||    
T  38392454 ttaatattttgtaagatgactgatttgtaataatgtaaaatttagttttagaacggttcaccaacatgacactagctgatatgatatcagcagttatatt 38392355  T
Q  386 attggctaaataaaatgactttttcaaaaaagtca 420  Q
    |||||||||| ||||| ||||||  ||||||||||    
T  38392354 attggctaaacaaaataacttttctaaaaaagtca 38392320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 40744362 - 40744311
Alignment:
Q  74 tagcaaaatccccttctgcagatgaagaataaagaggatgattaaaaatgat 125  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||||||||||    
T  40744362 tagcaaaatccccttataaagatgaagaagaaagaggatgattaaaaatgat 40744311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 43486211 - 43486249
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaa 280  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  43486211 aaatgatttaattttaaataaaataagttaataaatcaa 43486249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 435201 - 435264
Alignment:
Q  256 taaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataag 320  Q
    ||||||||||||||||||||||| |||||||||||  |||| || || |||| ||||||||||||    
T  435201 taaataaaataagttaataaatc-aaagtaattaaagttttctacgaggactaatttgtaataag 435264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 408
Target Start/End: Original strand, 4556944 - 4557092
Alignment:
Q  261 aaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataa-gatatatttagtcttatagtggttcttcacaaagacacta 359  Q
    |||||||||||||||||||||||||||||   |||| ||  | |||||||||||||||| || |  ||||| |||| | |||| | |||  |  | ||||    
T  4556944 aaaataagttaataaatcaaaagtaattattgttttttataaggactgatttgtaataaggaaaagtttagacttacaatggtccatcaacagtatacta 4557043  T
Q  360 gctgacatgacatcaacaattatgttattggctaaataaaatgactttt 408  Q
     ||||||||||||||||||||||  ||| ||| ||| ||||| ||||||    
T  4557044 actgacatgacatcaacaattatcctataggcaaaacaaaataactttt 4557092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 7758192 - 7758129
Alignment:
Q  355 cactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagt 418  Q
    ||||||||||||||| |||  |||||||  ||||| ||||| ||||| ||||||||||||||||    
T  7758192 cactagctgacatgatatcggcaattatactattgactaaacaaaataactttttcaaaaaagt 7758129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 23165342 - 23165291
Alignment:
Q  392 taaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    |||||||||| |||||||||||||||||| |||| ||||| |||| ||||||    
T  23165342 taaataaaataactttttcaaaaaagtcaatttcatgactgcaccgtagaag 23165291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 20373068 - 20373027
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  20373068 actttttcaaaaaagtcagtttcctgactgcaccatagaagc 20373027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 43486145 - 43486197
Alignment:
Q  79 aaatccccttctgcagatgaagaataaagaggatgattaaaaatgatttaattt 132  Q
    |||||||||| ||||||||||||| ||| |||||| ||||||| ||||||||||    
T  43486145 aaatcccctt-tgcagatgaagaagaaaaaggatggttaaaaacgatttaattt 43486197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 219 - 441
Target Start/End: Original strand, 26411984 - 26412207
Alignment:
Q  219 caaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaata 318  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||| ||||    
T  26411984 caaaatgaacagatgaagaacaaaaatgaatttattttaaataaaataagttaataaatcaaaagtaattaatattttatacgaggactgatttgcaata 26412083  T
Q  319 agatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaag 417  Q
    ||||||| |||||||||| | |||| | ||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||    
T  26412084 agatataatttagtcttacaatggtccatcacaaagatattagctgacatgacatcaacaatcatgctattggctaaataaaatgactttttcaaataag 26412183  T
Q  418 tcattttcttgactacaccataga 441  Q
    ||||||||||||||||||||||||    
T  26412184 tcattttcttgactacaccataga 26412207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 444
Target Start/End: Complemental strand, 8763051 - 8762864
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      |||| |||||||| || ||||||||||||||||  || | |||||| |||  ||||| | |||||    
T  8763051 attttaaataaaataagttaataaatcaa------ttaatattttgtacgaggactgatttgtaataaagtaaaatttagtgttacggtggtccatcaca 8762958  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||| ||||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  8762957 aagacactcgctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 8762864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 444
Target Start/End: Original strand, 13888300 - 13888487
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      |||| |||||||| || ||||||||| ||||||  || | |||||| ||| || ||| | |||||    
T  13888300 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttataataaagtaaaatttagtgttacaggggtccatcaca 13888393  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| ||| ||||| ||||  ||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  13888394 aagacactagctgacatggcataaacaactatgcaattggttaaataaaatgacttttttaaaaaagtcattttttttactacaccatagaagc 13888487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 240 - 441
Target Start/End: Complemental strand, 12080593 - 12080405
Alignment:
Q  240 aaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatag 338  Q
    ||||||||||| ||||||||||||||||||||||||||              |||||||| || ||||||||||||||||| || | |||||||||| ||    
T  12080593 aaaaatgatttaattttaaataaaataagttaataaat--------------attttgtatgaggactgatttgtaataaggtaaagtttagtcttaaag 12080508  T
Q  339 tggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccat 438  Q
    |||| |  ||  | ||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| |||| ||||||||||||    
T  12080507 tggtccaccagcaggacactagctgacatgacatcaacaattatgttatcgactaaacaaaataactttttcaaaaaagtcaatttcctgactacaccat 12080408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 26411796 - 26411915
Alignment:
Q  34 taaatccctaatccgggttagcaaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagaggatgattaaaaatgatttaatttt 133  Q
    ||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||  ||||||| ||| |||||| ||||||||||||||||||||||     
T  26411796 taaatccctaatttgggttagcaaaatgtataatttaggttagcaaaatccccttccacagatgaggaagaaagagaatgattaaaaatgatttaatttg 26411895  T
Q  134 a-cataaaatctctttctgc 152  Q
    | ||||||||| | ||||||    
T  26411896 agcataaaatcgccttctgc 26411915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 242 - 420
Target Start/End: Complemental strand, 33848218 - 33848039
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtg 340  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||| || || |||||| ||||||| || | |||||||||| |||     
T  33848218 aaatgatttaattttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagta 33848119  T
Q  341 gttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtca 420  Q
    ||   |||  | |||||||||| ||||| ||| ||||||||| ||||||  |||| ||| | |||||||||||| |||||    
T  33848118 gtctatcagcatgacactagcttacatgtcattaacaattatattattgattaaacaaagtaactttttcaaaatagtca 33848039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 12080634 - 12080568
Alignment:
Q  76 gcaaaatccccttctgcagatgaagaataaagaggatgattaaaaatgatttaattttacataaaat 142  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  12080634 gcaaaatccccttttgcagatgaagaagaaagaggatgattaaaaatgatttaattttaaataaaat 12080568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 325 - 444
Target Start/End: Original strand, 3014702 - 3014820
Alignment:
Q  325 atttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcatttt 424  Q
    ||||||| ||| |||||| | |||||||||||||| |||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||| |||||||    
T  3014702 atttagtgttacagtggtccatcacaaagacactaactgacatggcatgaacaactatgctattggttaaacaaaatgacttttt-aaaaaaatcatttt 3014800  T
Q  425 cttgactacaccatagaagc 444  Q
     |||||| ||||||| ||||    
T  3014801 gttgactgcaccataaaagc 3014820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 242 - 415
Target Start/End: Complemental strand, 33752579 - 33752405
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtg 340  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||| || || |||||| ||||||| || | |||||||||| |||     
T  33752579 aaatgatttaattttaaataaaacaagttaataaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagta 33752480  T
Q  341 gttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaa 415  Q
    ||    ||  | |||| ||||| ||||| ||| ||||||||| |||||| ||||| ||| | |||||||| ||||    
T  33752479 gtctaccaacatgacagtagctcacatgtcattaacaattatattattgactaaacaaagtaactttttctaaaa 33752405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 425
Target Start/End: Original strand, 10053782 - 10053953
Alignment:
Q  249 tttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactga--tttgtaat-aagatatatttagtcttatagtggttct 345  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||  |||||||| |||  | |||||||| || |||||| |     
T  10053782 tttaatttaaataaaataagttaataaatcaagagtaattaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtcc- 10053880  T
Q  346 tcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaa-atgactttttcaaaaaagtcattttc 425  Q
            |||||||||||||||||||||||| ||||  |||||| |||| ||| || |||||||||||||||||| ||||    
T  10053881 --------acactagctgacatgacatcaacagttatactattgggtaaacaaacataactttttcaaaaaagtcaatttc 10053953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 445
Target Start/End: Original strand, 25654588 - 25654728
Alignment:
Q  304 gactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatg 402  Q
    ||||||||||||||||| || | |||||| ||| |||||| | |||  || ||||||| |||||| ||||||||||||||  |||||| |||| |||||     
T  25654588 gactgatttgtaataaggtaaagtttagttttagagtggtccatcaataatacactagttgacat-acatcaacaattatactattggttaaacaaaata 25654686  T
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    ||||||  |||||||||| ||| |||||  |||||||||||||    
T  25654687 acttttctaaaaaagtca-tttattgacagcaccatagaagcc 25654728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 41140356 - 41140292
Alignment:
Q  55 caaaatgtataatttagactagcaaaatccccttctgcagatgaagaataaagaggatgattaaaa 120  Q
    ||||||| |||||||||  |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  41140356 caaaatgaataatttaggttagcaaaatccccttctgca-atgaagaagaaagaggaggattaaaa 41140292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 21321040 - 21321130
Alignment:
Q  354 acactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||| ||||| |||  || ||||  ||||||||||| ||||| |||||||||||||||||| |||  || || ||||||||||||    
T  21321040 acactagctggcatgaaatcgtcagttatactattggctaaacaaaataactttttcaaaaaagtcagttttctggctgcaccatagaagc 21321130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 36055634 - 36055541
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcct 446  Q
    |||||||| |||| |||||||  || ||||  |||| |||||| ||||| |||||| ||||||||| | ||| ||||||||||| |||||||||    
T  36055634 gacactagttgacttgacatcgccagttatactattagctaaacaaaataacttttccaaaaaagttagttttttgactacaccttagaagcct 36055541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 33848283 - 33848232
Alignment:
Q  81 atccccttctgcagatgaagaataaagaggatgattaaaaatgatttaattt 132  Q
    |||||||| || |||||||||| |||| |||||| |||||||||||||||||    
T  33848283 atccccttatgtagatgaagaagaaagcggatgagtaaaaatgatttaattt 33848232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 23954597 - 23954556
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  23954597 actttttcaaaaaagtcagtttcctgactgcaccatagaagc 23954556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 24886467 - 24886508
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  24886467 actttttcaaaaaagtcagtttcttgactgcaccataaaagc 24886508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 220 - 448
Target Start/End: Complemental strand, 8434 - 8205
Alignment:
Q  220 aaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataa 319  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| | |||||||||    
T  8434 aaaatgaacagatgtagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataa 8335  T
Q  320 gatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagt 418  Q
      || | ||||||| || |||||| | |||  |||||| |||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||    
T  8334 agtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatgatatcaactactatgttattggttaaataaaatgactttttcaaaaaagt 8235  T
Q  419 cattttcttgactacaccatagaagcctcc 448  Q
    |||||||||||| |||||||||||||||||    
T  8234 cattttcttgacaacaccatagaagcctcc 8205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 220 - 448
Target Start/End: Original strand, 422138 - 422367
Alignment:
Q  220 aaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataa 319  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| | |||||||||    
T  422138 aaaatgaacagatgtagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtatgaggactaagttgtaataa 422237  T
Q  320 gatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagt 418  Q
      || | ||||||| || |||||| | |||  |||||| |||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||    
T  422238 agtaaagtttagtcgtagagtggtccatcaacaagacattagctgacatgatatcaactactatgttattggttaaataaaatgactttttcaaaaaagt 422337  T
Q  419 cattttcttgactacaccatagaagcctcc 448  Q
    |||||||||||| |||||||||||||||||    
T  422338 cattttcttgacaacaccatagaagcctcc 422367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 231 - 444
Target Start/End: Original strand, 28012868 - 28013083
Alignment:
Q  231 atgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaa-gtaattaacattttgtaagatgactgatttgtaataagatata-ttt 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||||||||||||||||| || | |||    
T  28012868 atgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaaagtaattaatagtttttacgaggactgatttgtaataaggtaaagttt 28012967  T
Q  329 agtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttg 428  Q
    | ||||    ||||   |||  ||||||||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||| ||||||||||    
T  28012968 actcttgcgatggtctatcagcaagacactagctgacatgacatcaacaattatgctattggctaaccaaaataactttttcaaaaaagacattttcttg 28013067  T
Q  429 actacaccatagaagc 444  Q
    ||||||||||||||||    
T  28013068 actacaccatagaagc 28013083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 7842335 - 7842427
Alignment:
Q  231 atgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagata 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || || || |||||||||||||||||    
T  7842335 atgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaataaatattttttacgaggattgatttgtaataagata 7842427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 7843091 - 7843165
Alignment:
Q  370 catcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||| ||||||| ||  ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  7843091 catcaacaattatgctattggccaaccaaaataactttttaaaaaaagtcattttcttgactacaccatagaagc 7843165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 445
Target Start/End: Original strand, 47554977 - 47555136
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttc-acaaagacactagctgacatgacatcaacaattatgt 384  Q
    |||| |||||||| |||||||||||||||||||| || | |||| ||||| |||||| || | |  | |||||||| ||||||| | |||||| ||||      
T  47554977 ttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtggt-ctactagcaggacactagttgacatggcctcaacagttatac 47555075  T
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    |||||| |||| ||||| |||||||||||||||||| |||| | ||| |||| ||||||||    
T  47555076 tattggttaaacaaaataactttttcaaaaaagtcagtttcctaactgcaccgtagaagcc 47555136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 5500643 - 5500738
Alignment:
Q  354 acactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcctcca 449  Q
    |||||||||||||||||||| | | ||||  |||| |||||| ||||| |||||||||||||||| | ||| || ||| |||| ||||||||||||    
T  5500643 acactagctgacatgacatcgatagttatactattagctaaacaaaataactttttcaaaaaagttagttttttaactgcaccgtagaagcctcca 5500738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 42663283 - 42663232
Alignment:
Q  392 taaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    |||||||||| |||||||||||||||||| |||| ||||| |||||||||||    
T  42663283 taaataaaataactttttcaaaaaagtcaatttcgtgactgcaccatagaag 42663232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 17695316 - 17695267
Alignment:
Q  246 gattttattttaaataaaataagttaataaatcaaaagtaattaacatttt 296  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  17695316 gatttaattttaaataaaataagttaataaatcaaaa-taattaatatttt 17695267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 444
Target Start/End: Original strand, 26970835 - 26970901
Alignment:
Q  378 attatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||| ||||||  ||||||||| |||||||||||||||||| |||  ||||||||||||| ||||    
T  26970835 attatgctattggtaaaataaaataactttttcaaaaaagtcagtttactgactacaccataaaagc 26970901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 426
Target Start/End: Original strand, 15964322 - 15964462
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| ||||| || || ||||||||||||||||| || | |||||| ||| |||||| | | |  | ||||||||||||||||||||| ||| ||||  |    
T  15964322 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagagtggtacattagtaggacactagctgacatgacatcgacagttatact 15964421  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttct 426  Q
    |||||||||| ||||| | ||||  |||||| | |||||||    
T  15964422 attggctaaacaaaataatttttctaaaaaaataattttct 15964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 16135612 - 16135676
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaag 417  Q
    |||||||| |||||||||||| ||| ||||  |||| |||||| ||||| |||||||||||||||    
T  16135612 gacactagttgacatgacatcgacagttatactattagctaaacaaaataactttttcaaaaaag 16135676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 10598206 - 10598264
Alignment:
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    |||||| |||| ||||  |||||||||||||||||| |||||||||| |||| ||||||    
T  10598206 tattggttaaacaaaacaactttttcaaaaaagtcagtttcttgactgcaccgtagaag 10598264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 226 - 439
Target Start/End: Original strand, 59334 - 59548
Alignment:
Q  226 aacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagat-at 324  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| |     
T  59334 aacagatgaagaacaaaattgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtacgatgactgatttataataagataaa 59433  T
Q  325 atttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcatttt 424  Q
    |||||||||||   |||| | |||  ||| || ||||||||||| |||||| |||||||  |||||||||||||||| |||||||||||||||||||||     
T  59434 atttagtcttacgttggtccatcaagaagccattagctgacatggcatcaataattatgcaattggctaaataaaataactttttcaaaaaagtcatttg 59533  T
Q  425 cttgactacaccata 439  Q
    ||| |||||||||||    
T  59534 cttaactacaccata 59548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 252 - 444
Target Start/End: Original strand, 6357008 - 6357201
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||   | |||| |||| ||||||  || | ||||||||||||||||| | |||||    
T  6357008 attttaaataaaataagtttataaatcaaaagtaattaatattttgttcaaggacttatttataataaagtaaaatttagtcttatagtggtccatcaca 6357107  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||  |||||||||| ||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6357108 aagacatcagctgacatggcattaagaattatgctattggctaaattaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 6357201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 217 - 448
Target Start/End: Complemental strand, 43445457 - 43445217
Alignment:
Q  217 aacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaa 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||    
T  43445457 aacaaaatgaacagatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactaatttgtaa 43445358  T
Q  317 t-aagatatatttagtcttatagtggttcttcacaaagacactagctgacatgaca-------tcaacaattatgttattggctaaataaaatgac-ttt 407  Q
    | |||  | |||||||||||  ||||| | ||  ||| ||| ||  ||||||| ||       | ||||| |||  |||||||||||||||||||| |||    
T  43445357 taaagtaaaatttagtcttacggtggtccatccgaaaaacattaattgacatggcataacaagttaacaactattctattggctaaataaaatgactttt 43445258  T
Q  408 ttcaaaaaagtcattttcttgactacaccatagaagcctcc 448  Q
    || |||||| | |||||||||||||||||||||||| ||||    
T  43445257 tttaaaaaaattattttcttgactacaccatagaaggctcc 43445217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 252 - 444
Target Start/End: Original strand, 7565482 - 7565671
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata---tttagtcttatagtggttcttca 348  Q
    |||||||||||||||||||||||||||||      |||| |||||||| || |||||||||||||||| | |||   |||||| ||| |||||| | |||    
T  7565482 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtaataaaaaataaaatttagtgttacagtggtccatca 7565575  T
Q  349 caaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||||||||||| |||||| |||| |||||||    
T  7565576 caaagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccgtagaagc 7565671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 252 - 442
Target Start/End: Original strand, 32652592 - 32652777
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      |||| |||||||| || ||||||||||||||||  || | |||| | | ||||||||   |||||    
T  32652592 attttaaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtaataaagtaaaatttaatgtcatagtggtctatcaca 32652685  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaa 442  Q
    |||||||||||||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||||| ||||| |||||| ||||||||||    
T  32652686 aagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagttatttttttgactgcaccatagaa 32652777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 293 - 444
Target Start/End: Original strand, 41644101 - 41644253
Alignment:
Q  293 ttttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggc 391  Q
    ||||||| || ||||||||||||||||| || | |||||| ||| |||||| |  ||  | |||||||||||||||||||||||||||||| ||||||||    
T  41644101 ttttgtatgaggactgatttgtaataaggtagagtttagttttagagtggtccaccagcatgacactagctgacatgacatcaacaattatattattggc 41644200  T
Q  392 taaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||| |||||   |||||||||||||| | ||| || ||| |||| |||||||    
T  41644201 taaacaaaatatatttttcaaaaaagtaagtttttttactgcaccgtagaagc 41644253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 287 - 445
Target Start/End: Original strand, 19093676 - 19093835
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| ||||||||||| ||||||||||||||||| || | |||||| ||| |||||| || ||  |||||||||| ||| || ||||||||||||||  |    
T  19093676 ttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtggtcctccaacaagacactagttgagataacatcaacaattatact 19093775  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    ||||  |||| ||| | ||||||| |||||||||| ||| |||||| |||| ||||||||    
T  19093776 attgattaaacaaattaacttttttaaaaaagtcaattttttgactgcaccgtagaagcc 19093835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 58724 - 58803
Alignment:
Q  55 caaaatgtataatttagactagcaaaatccccttctgcagatgaagaataa--agaggatgattaaaaatgatttaattt 132  Q
    |||||||||||||||||  ||| ||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  58724 caaaatgtataatttaggttagtaaagtccccttctgcagatgaagaagaaagagaggatgattaaaaatgatttaattt 58803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 287 - 445
Target Start/End: Original strand, 6177996 - 6178155
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| |||||||||||||||||||| || | ||||||  || |||||| |  ||  | |||||||||||||||||||||  || ||||  |    
T  6177996 ttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtggtccaccaacatgacactagctgacatgacatcggcagttatact 6178095  T
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    |||||||||| ||||| ||||||  |||||||||| ||| |||||| |||| ||||||||    
T  6178096 attggctaaacaaaataacttttctaaaaaagtcagttttttgactgcaccgtagaagcc 6178155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 19073574 - 19073708
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| ||||| || || ||||||||||||||||| || | |||||| ||| ||||||||  ||  | ||||||  ||||||||||||||||||||||  |    
T  19073574 ttaatattttatacgaggactgatttgtaataaggtaaaatttagttttaaagtggttcaccagcaggacactgactgacatgacatcaacaattatact 19073673  T
Q  386 attggctaaataaaatgactttttcaaaaaagtca 420  Q
    |||| ||||||||||| |||||| |||||||||||    
T  19073674 attgactaaataaaataacttttacaaaaaagtca 19073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 27355145 - 27355218
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgta 315  Q
    |||||||||||||||||| |||||||| |||||||||||||||| || | ||||||||  ||||||||||||||    
T  27355145 aaatgattttattttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgta 27355218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 45412024 - 45411951
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgta 315  Q
    |||||||||||||||||| |||||||| |||||||||||||||| || | ||||||||  ||||||||||||||    
T  45412024 aaatgattttattttaaacaaaataagctaataaatcaaaagtagttgatattttgtattatgactgatttgta 45411951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 445
Target Start/End: Complemental strand, 18514559 - 18514399
Alignment:
Q  286 attaacattttgtaagatgactgatttgtaataagatatattt-agtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgt 384  Q
    ||||| |||||||| ||||| |||||| ||||||  || | || |||||||||||||| |  ||  | |||||||| ||||||||||| |||| ||||      
T  18514559 attaatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccaccagcacgacactagttgacatgacattaacagttatac 18514460  T
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    |||| |||||| ||||| |||||||||||||| ||| |||| ||||| |||| ||||||||    
T  18514459 tattagctaaacaaaataactttttcaaaaaattcagtttcctgactccaccgtagaagcc 18514399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 419
Target Start/End: Complemental strand, 34441701 - 34441573
Alignment:
Q  292 attttgtaagatgactgatttgtaataagatatat-ttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattgg 390  Q
    |||||||| || |||||||||||||||||||| |  ||||| ||| |||| | |  ||  | ||||||||||||||||| | |  |||||||  |||||     
T  34441701 attttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccaccaacatgacactagctgacatgataacggcaattatactattga 34441602  T
Q  391 ctaaataaaatgactttttcaaaaaagtc 419  Q
    | ||||||||| |||||||||||||||||    
T  34441601 ccaaataaaataactttttcaaaaaagtc 34441573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 43445627 - 43445543
Alignment:
Q  56 aaaatgtataatttagactagcaaaatccccttc------tgcagatgaagaataa--agaggatgattaaaaatgatttaattt 132  Q
    ||||||||||||||||  ||||||||||||||||      || |||||||||| ||  ||||||||||||||||| |||||||||    
T  43445627 aaaatgtataatttaggttagcaaaatccccttccgcatatgaagatgaagaagaaagagaggatgattaaaaataatttaattt 43445543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 449 - 599
Target Start/End: Original strand, 8015191 - 8015342
Alignment:
Q  449 ataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaactaatggaagggttaatggaataaatcacaattagg 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  8015191 ataagtataatgggttgttactaattgaaggaaaatgaaagggttaatggtggctagtaactaactaatgaaagagttaatggaataaattacaattagg 8015290  T
Q  549 acccaccacgatgtgattaagaag-gaaaaagtaggataaaaatagggttta 599  Q
      ||||||| |||||||||||||| || |||||||| |||||||||||||||    
T  8015291 gtccaccactatgtgattaagaagtgagaaagtagggtaaaaatagggttta 8015342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 252 - 444
Target Start/End: Original strand, 14246379 - 14246572
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||   | |||| |||||||||||  || | ||||||||||||||||| | |||||    
T  14246379 attttaaataaaataagtttataaatcaaaaataattaatattttgttcaaggacttatttgtaataaagtaaaatttagtcttatagtggtccatcaca 14246478  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||  |||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14246479 aagacatcagctgacatggcattaagaattatgctattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 14246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 217 - 408
Target Start/End: Original strand, 5813397 - 5813587
Alignment:
Q  217 aacaaaatgaacatatgaagaacaaaa--atgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgt 314  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||| |||| |    
T  5813397 aacaaaatgaacagatgaataacaaaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaatattttatacaatgacttattttt 5813496  T
Q  315 aataagatatatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttt 408  Q
    |||||  || ||||||||||| |||||| | ||| |||||||||| |||||||| |||||| |   | | ||||||||||| ||||||||||||    
T  5813497 aataaagtaaatttagtcttacagtggtccatcataaagacactaactgacatggcatcaaga---acgctattggctaaacaaaatgactttt 5813587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 215 - 436
Target Start/End: Complemental strand, 22722126 - 22721927
Alignment:
Q  215 caaacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgt 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||     
T  22722126 caaacaaaatgaacagatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaatcaatattttgtacgatgaatgatttg- 22722028  T
Q  315 aataagatatatttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaa 414  Q
                         ||||||| | |||  |||||||||||||||||| |||||||| ||||   |||||||||| |||||||||||| |||||    
T  22722027 ---------------------tagtggtccatcaacaagacactagctgacatggcatcaacatttattccattggctaaacaaaatgacttttccaaaa 22721949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 252 - 444
Target Start/End: Complemental strand, 5915125 - 5914938
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      |||| ||||| || || |||| |||||||||||  || | |||||| ||| |||||| | |||||    
T  5915125 attttaaataaaataagttaataaatcaa------ttaatattttttatgaggactaatttgtaataaagtaaaatttagtgttacagtggtccatcaca 5915032  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||||||||||||||  || ||||| | || |||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  5915031 aagacactagctgacatggtatgaacaactttgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 5914938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 37795138 - 37795210
Alignment:
Q  372 tcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||| |||| |||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  37795138 tcaacaactatgatattggctgaacaaaatgactttttcaaaagagtcattttcttaactacaccatagaagc 37795210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 28292532 - 28292430
Alignment:
Q  242 aaatgattttattttaaataaaataa-gttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagt 339  Q
    ||||||||| ||| ||| |||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||||||| || | |||||||||| |||    
T  28292532 aaatgatttaattctaattaaaataaagttaataaatcaaaagtaattaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagt 28292433  T
Q  340 ggt 342  Q
    |||    
T  28292432 ggt 28292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 17612623 - 17612686
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaa 416  Q
    ||||||||||||||||||||| ||| ||||  ||||||||||||||||| ||||||||||||||    
T  17612623 gacactagctgacatgacatcgacagttatactattggctaaataaaataactttttcaaaaaa 17612686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 9743876 - 9743959
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacacc 436  Q
    |||||||| | ||||||| |  |||||||| ||||||| |||| ||||| |||||||||||||||||| ||| |||||| ||||    
T  9743876 gacactagttaacatgacgttgacaattatattattggttaaacaaaataactttttcaaaaaagtcaattttttgacttcacc 9743959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 47237449 - 47237511
Alignment:
Q  258 aataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataag 320  Q
    |||||||||||||||||||||||||||||||||   ||| || || ||| |||||||||||||    
T  47237449 aataaaataagttaataaatcaaaagtaattaatgctttctatgaggaccgatttgtaataag 47237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 47073130 - 47073065
Alignment:
Q  379 ttatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||| ||||||  ||||||||| |||||||||||| ||||| |||  ||||||||||||||||||    
T  47073130 ttatgctattggtaaaataaaataactttttcaaaatagtcaatttactgactacaccatagaagc 47073065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 28292422 - 28292363
Alignment:
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||||||| |||  |||||||    
T  28292422 tattggctaaataaaataacttttttaaaaaagtcaggttcttgactgcactgtagaagc 28292363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 3042999 - 3043040
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||||||||| |||| |||||||    
T  3042999 actttttcaaaaaagtcaatttcttgactgcaccgtagaagc 3043040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 4205364 - 4205405
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||||||||| |||| |||||||    
T  4205364 actttttcaaaaaagtcagtttcttgactgcaccgtagaagc 4205405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 7703889 - 7703938
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagcctccataa 452  Q
    |||||||||||||||||| |||| ||||| |||| ||||||| |||||||    
T  7703889 actttttcaaaaaagtcagtttcatgactgcaccgtagaagcttccataa 7703938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 36493520 - 36493479
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  36493520 actttttcaaaaaagtcaatttcctgactgcaccatagaagc 36493479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 251 - 443
Target Start/End: Complemental strand, 1872774 - 1872582
Alignment:
Q  251 tattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcac 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  | ||||||||| ||||||  || | ||| || ||| | || | | ||||    
T  1872774 tattttaaataaaataagttaataaatcaaaagtaattaatattttgtataaggactgatttataataaagtaaaatttggttttacaatg-tccatcac 1872676  T
Q  350 aaagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    ||||||| ||||||||||| ||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1872675 aaagacattagctgacatggcatcaacaactatgttaatggctgaacaaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 1872582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 445
Target Start/End: Complemental strand, 4108736 - 4108582
Alignment:
Q  292 attttgtaagatgactgatttgtaataagatatat-ttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattgg 390  Q
    |||||||| || ||||| |||||||||||||| |  ||||| ||| |||||| |  ||  | ||||||||||||||||| | |  ||||||| ||||||     
T  4108736 attttgtatgaagactgttttgtaataagataaagcttagttttaaagtggtccaccaacatgacactagctgacatgataacggcaattatattattga 4108637  T
Q  391 ctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagcc 445  Q
    ||||| ||||| |||||||||||||||||| ||| |||||| |||| || |||||    
T  4108636 ctaaacaaaataactttttcaaaaaagtcaattttttgacttcaccgtaaaagcc 4108582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 3038627 - 3038761
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| ||||| |||||||||||||| || | |||||| ||| |||||| |  ||  |||||||| | ||||||||||||| ||||| |  |    
T  3038627 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtccaccagcaagacacttgttgacatgacatcagcaattctact 3038726  T
Q  386 attggctaaataaaatgactttttcaaaaaagtca 420  Q
    |||||||||| ||||| | ||||| ||||||||||    
T  3038727 attggctaaacaaaataatttttttaaaaaagtca 3038761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 30650961 - 30650903
Alignment:
Q  386 attggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||| ||||| ||||| |||||||||||||||||| |||||||||| |||| |||||||    
T  30650961 attgactaaacaaaataactttttcaaaaaagtcaatttcttgactgcaccgtagaagc 30650903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 23176608 - 23176479
Alignment:
Q  292 attttgtaagatgactgatttgtaataagatatat-ttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgttattgg 390  Q
    |||||||| || |||| ||||||||||||||| |  ||||| ||| |||||| | |||  | ||||||||||||||||| |||   ||||||  |||||     
T  23176608 attttgtatgaggactaatttgtaataagataaagcttagttttagagtggtccatcaacatgacactagctgacatgatatcggaaattatactattga 23176509  T
Q  391 ctaaataaaatgactttttcaaaaaagtca 420  Q
     |||| ||||| ||||||||||||||||||    
T  23176508 ataaacaaaataactttttcaaaaaagtca 23176479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 7290941 - 7291073
Alignment:
Q  287 ttaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatgtt 385  Q
    |||| |||||||| || || ||||||||||||||||| | |||||| ||| ||||||||   |  | |||||||| ||| |||||||| ||| ||||  |    
T  7290941 ttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggttcacaaacaggacactagttgatatgacatcgacagttatact 7291040  T
Q  386 attggctaaataaaatgactttttcaaaaaagt 418  Q
    |||| ||||| ||||| | ||||||||||||||    
T  7291041 attgcctaaacaaaataattttttcaaaaaagt 7291073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 443
Target Start/End: Original strand, 5018555 - 5018606
Alignment:
Q  392 taaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    |||||||||| |||||||||||||||||| |||| ||| | |||||||||||    
T  5018555 taaataaaataactttttcaaaaaagtcaatttcgtgattgcaccatagaag 5018606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 440
Target Start/End: Complemental strand, 18756426 - 18756339
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatag 440  Q
    |||| ||||| |||| |||||  ||||||| |||||||||||| ||||| |||||||| ||||| ||| |||  ||||| ||||||||    
T  18756426 gacattagctaacataacatcggcaattatattattggctaaacaaaataactttttccaaaaaatcaattttctgactgcaccatag 18756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 6446239 - 6446181
Alignment:
Q  385 tattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaag 443  Q
    ||||||||||| ||||  ||||||| |||||||||| |||||||||| |||| ||||||    
T  6446239 tattggctaaaaaaaacaacttttttaaaaaagtcagtttcttgactgcaccgtagaag 6446181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 5299757 - 5299716
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  5299757 actttttcaaaaaagtcagtttcatgactgcaccatagaagc 5299716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 444
Target Start/End: Complemental strand, 37970330 - 37970289
Alignment:
Q  403 actttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  37970330 actttttcaaaaaagtcactttcctgactgcaccatagaagc 37970289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 444
Target Start/End: Complemental strand, 4487911 - 4487724
Alignment:
Q  252 attttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcaca 350  Q
    |||||||||||||||||||||||||||||      ||||  ||||||| || ||||||||||||||||  || | |||||| ||| |||||| | |||||    
T  4487911 attttaaataaaataagttaataaatcaa------ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagtgttacagtggtccatcaca 4487818  T
Q  351 aagacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||||||||||||| ||| ||||| |||| |||||| |||| ||||||||||||| |||||||||||||| || ||| ||||||||||||    
T  4487817 aagacactagctgacatggcatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttaactgcaccatagaagc 4487724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 256 - 444
Target Start/End: Original strand, 25441684 - 25441867
Alignment:
Q  256 taaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagatata-tttagtcttatagtggttcttcacaaaga 354  Q
    |||||||||||||||||||||||||      |||| |||||||| || ||||||||||| ||||  || | |||||| ||| |||||| | |||||||||    
T  25441684 taaataaaataagttaataaatcaa------ttaatattttgtatgaggactgatttgtgataaagtaaaatttagtgttacagtggtccatcacaaaga 25441777  T
Q  355 cactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    |||||||| ||||||||| ||||| |||| |||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||    
T  25441778 cactagctaacatgacatgaacaactatgctattggttaaacaaaatgacttttttaaaaaagtcatttttttgactgcaccatagaagc 25441867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 18309243 - 18309160
Alignment:
Q  215 caaacaaaatgaacatatgaagaacaaaaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgta 299  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18309243 caaacaaaatgaatagatgaagaacaacaatgattttattttaaat-aaataagttaataaatcaaaagtaattaatattttgta 18309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 285 - 441
Target Start/End: Complemental strand, 18306709 - 18306552
Alignment:
Q  285 aattaacattttgtaagatgactgatttgtaataagatatatttag-tcttatagtggttcttcacaaagacactagctgacatgacatcaacaattatg 383  Q
    |||||| |||||||| || || |||||||||||||| || | || | ||| | |||||| | |||  |||||||||||||||||| |||||||| ||||     
T  18306709 aattaatattttgtacgaggattgatttgtaataaggtaaaatttgatctaacagtggtccatcagcaagacactagctgacatggcatcaacatttatt 18306610  T
Q  384 ttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccataga 441  Q
     ||||||||||| |||||||| ||| |||||||||||||| ||| |||||||||||||    
T  18306609 ctattggctaaacaaaatgacatttccaaaaaagtcatttccttaactacaccataga 18306552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 26819812 - 26819709
Alignment:
Q  217 aacaaaatgaacatatgaagaacaaa-aatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgta 315  Q
    |||||||| |||| ||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||| || |||||||    
T  26819812 aacaaaataaacagatgaataacaaataattattttattttaaataaaataagtttataaatcaaaagtaattaatattttgtacaatggcttatttgta 26819713  T
Q  316 ataa 319  Q
    ||||    
T  26819712 ataa 26819709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 444
Target Start/End: Complemental strand, 11083917 - 11083826
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtcattttcttgactacaccatagaagc 444  Q
    ||||||||||||||||| ||  ||||||||  ||||  ||||||||||| |||||||||||||||| | ||| |||||| |||| |||||||    
T  11083917 gacactagctgacatgatattgacaattatactattaactaaataaaataactttttcaaaaaagtaaattttttgacttcaccgtagaagc 11083826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 4104305 - 4104372
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtca 420  Q
    ||||||| ||||||||||||| ||||||||  ||||| | | | ||||| ||||||||||||||||||    
T  4104305 gacactaactgacatgacatcgacaattatactattgacaagacaaaataactttttcaaaaaagtca 4104372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 30341505 - 30341572
Alignment:
Q  353 gacactagctgacatgacatcaacaattatgttattggctaaataaaatgactttttcaaaaaagtca 420  Q
    |||||||||| ||||||||||| |||||||  || |||||||| ||||| ||||| ||||| ||||||    
T  30341505 gacactagctaacatgacatcagcaattatactactggctaaacaaaataactttctcaaacaagtca 30341572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 11544 - 11443
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataagat-atatttagtcttatagtg 340  Q
    ||||||||| |||||||| ||||||||||||||||| | |||||||||  |||||||| || ||||||||||||||||||| | ||||||||||| ||||    
T  11544 aaatgatttaattttaaacaaaataagttaataaattataagtaattattattttgtatgaggactgatttgtaataagataaaatttagtcttagagtg 11445  T
Q  341 gt 342  Q
    ||    
T  11444 gt 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 107904 - 107982
Alignment:
Q  242 aaatgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataag 320  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |  |||| || || |||||||||||||||||    
T  107904 aaatgattttattttaaataaaataagttaataaattaaaagtaatttatgttttctatgaagactgatttgtaataag 107982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 65949 - 66025
Alignment:
Q  244 atgattttattttaaataaaataagttaataaatcaaaagtaattaacattttgtaagatgactgatttgtaataag 320  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| || |||| |||| |||||||    
T  65949 atgatttaattataaataatataagttaataaatcaaaagtaattaatattttgtatgaggactaatttataataag 66025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 442
Target Start/End: Original strand, 267658 - 267695
Alignment:
Q  405 tttttcaaaaaagtcattttcttgactacaccatagaa 442  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  267658 tttttcaaaaaagtcagtttcttgactgcaccatagaa 267695  T

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