View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_15 (Length: 390)
Name: NF20712_low_15
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 36808480 - 36808094
Alignment:
| Q |
1 |
cttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattaccacatttgccgtaataaggaaagtcggaatcg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
36808480 |
cttctccttatatatttgaatttgagcctt--gcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaagtcggaatcg |
36808383 |
T |
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| Q |
101 |
tcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccattctctgtttctcccga-------cgtttctcccctaattcctattttggta |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |
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| T |
36808382 |
tcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccattctctgtttctcccaaattcagccgtttctcccctaattcctattttgcta |
36808283 |
T |
|
| Q |
194 |
ggctgatcttggatgacaccatcctgcataaatataatctttgattttctgtactgtaatgtaatttgttgtccttaacaataatttttgagtagtaact |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36808282 |
ggctgatcttggatgacaccatcctgcataaatataatctttaattttctgtactgtaatgtaatttgttgtccttaacaataatttttgagttgtaact |
36808183 |
T |
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| Q |
294 |
caaaggcggtgattttacgactattcttcaagacaacatggttttggatataaaacaagttaaaatcacattgaactctctttcttctc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36808182 |
caaaggcggtgattttacgactattcttcaagacaacatggttttggatataaaacaagttaaaatcacattgaactcgctttcttctc |
36808094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 36512325 - 36512438
Alignment:
| Q |
1 |
cttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattaccacatttgccgtaataaggaaagtcggaatcg |
100 |
Q |
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|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
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| T |
36512325 |
cttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattaccacttttgacgtgataaggaaagtcggaatcg |
36512424 |
T |
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| Q |
101 |
tcatgcttagagaa |
114 |
Q |
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|||| ||||||||| |
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| T |
36512425 |
tcatacttagagaa |
36512438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 36526268 - 36526303
Alignment:
| Q |
347 |
aacaagttaaaatcacattgaactctctttcttctc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36526268 |
aacaagttaaaatcacattgaactctctttcttctc |
36526303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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