View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_19 (Length: 310)
Name: NF20712_low_19
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34549672 - 34549385
Alignment:
| Q |
1 |
acacacatgtcaactccaataataatttaataaatgacataattcatcataatcacttgcgtcgatcggtatcagatacttaccataagtgtccatgata |
100 |
Q |
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| T |
34549672 |
acacacatgtcaacgctaataataatttaataaatgacataattcatc---------tgcgtcgatcggtgtcagatacttaccataagtgtccatgata |
34549582 |
T |
|
| Q |
101 |
catagattatatatttcaatcttaatattcttcttnnnnnnntcttattatatttattgatatatgtacaattatatttttaacttgttattgtgttgat |
200 |
Q |
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| T |
34549581 |
catagattatatatttcaatcttaatattcttcttaaataaatcttattatatttattgatatatgtacaattacatttttaacttgttattgtgtggat |
34549482 |
T |
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| Q |
201 |
gaaaaactacagcgttgttaatcaactaccggaagtattgcgggataagttatacgggttgtccaggtgagaaaccgtgtgatcatattgatgcttg |
297 |
Q |
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| T |
34549481 |
gaaaaactacaacgttgttaatcaactacgggaagtattgcgggatacgttatacgggttgtccagacgagaaaccgtgtgatcatattgatgcttg |
34549385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 34547104 - 34546993
Alignment:
| Q |
186 |
tgttattgtgttgatgaaaaactacagcgttgttaatcaactaccggaagtattgcgggataagttatacgggttgtccaggtgagaaaccgtgtgatca |
285 |
Q |
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|||||||||||||||||||||||| |||| || |||||| ||| |||||||||| ||| || | ||| ||||||||||||| ||||||||||||||| | |
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| T |
34547104 |
tgttattgtgttgatgaaaaactatagcgatgggaatcaaatacgggaagtattgtggggtaggctattcgggttgtccaggcgagaaaccgtgtgatga |
34547005 |
T |
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| Q |
286 |
tattgatgcttg |
297 |
Q |
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| T |
34547004 |
tattgatgcttg |
34546993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 34555128 - 34555051
Alignment:
| Q |
220 |
aatcaactaccggaagtattgcgggataagttatacgggttgtccaggtgagaaaccgtgtgatcatattgatgcttg |
297 |
Q |
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|||||| ||| ||||||||||||| || ||||| |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
34555128 |
aatcaagtacgggaagtattgcggagtaggttattggggttgtccaggcgagaaaccgtgtgatgatattgatgcttg |
34555051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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