View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_21 (Length: 309)
Name: NF20712_low_21
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 38935722 - 38935997
Alignment:
| Q |
19 |
ggaagacccatttgcaatgagcacaattgagtggccttcatcgccgctgccgattgaaggagtaggcgggtatagaaggaggggaagaacaccatgggag |
118 |
Q |
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| T |
38935722 |
ggaagacccatttgcaatgagcacaattgagtggccttcatcgccgctgccgattgaaggagtaggcgggtatagaaggaggggaagaacaccatgggag |
38935821 |
T |
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| Q |
119 |
attaaagaaggagaaagtgaatataagatgaggtttgatatgcctggtatgaacaaagaggatgttaaggtttgggtggaagaaaagatgctggttgtga |
218 |
Q |
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| T |
38935822 |
attaaagaaggagaaagtgaatacaagatgaggtttgatatgcctggtatgaacaaagaggatgttaaggtttgggtggaagaaaagatgctggttgtga |
38935921 |
T |
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| Q |
219 |
aagctgagaaagcacctaagaagaagaatgatgaagatgaagaatggtctaagagctatggtaggtatagtagcag |
294 |
Q |
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| T |
38935922 |
aagctgagaaagcacctaagaagaagaatgatgaagatgaagaatggtctaagagctatggtaggtatagtagcag |
38935997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 20878818 - 20878882
Alignment:
| Q |
158 |
atgcctggtatgaacaaagaggatgttaaggtttgggtggaagaaaagatgctggttgtgaaagc |
222 |
Q |
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| T |
20878818 |
atgcctggtatgaacaaaaaagatgttaaggtgtggattgaagagaagatgctggtagtgaaagc |
20878882 |
T |
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