View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_22 (Length: 307)
Name: NF20712_low_22
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 33442549 - 33442270
Alignment:
| Q |
19 |
aagccgtccttagccgtttgtgacaatccccttaacctgaaattttatgtgtatatatacccgtattcaatctcttatcctaagtaaccaaattaaacaa |
118 |
Q |
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| T |
33442549 |
aagccgtccttagccgtttgtgacaatccccttgccctgaaattatatgtgtatatatacccgtattcaatctcttatattaagtaacaaaattaaacaa |
33442450 |
T |
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| Q |
119 |
agaaagagcaatactagtacttcatacatggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaag |
218 |
Q |
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| T |
33442449 |
agaaagagcaatactagtacttcaactatggctctttctcgtgctcttttcctctttgctttcattgctactatcttctcaaccatggctgtggcaaaag |
33442350 |
T |
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| Q |
219 |
attttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
298 |
Q |
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| T |
33442349 |
attttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
33442270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 33452807 - 33452520
Alignment:
| Q |
19 |
aagccgtccttagccgtttgtgacaatcccc--ttaacctgaaattttatgtgtatatatac------ccgtattcaatctcttatcctaagtaaccaaa |
110 |
Q |
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| T |
33452807 |
aagccgtccatagccgtttgttgcaatcccccctcaccctgatattttatgtgtatatatatatatatctgtatttaatctcttatagaaagtaaccaaa |
33452708 |
T |
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| Q |
111 |
ttaaacaaagaaagagcaatactagtacttcatacatggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgt |
210 |
Q |
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| T |
33452707 |
ttaaacaaagaaagagcaatactagtacttcatacatggctctttctcgtgctctttttctctttgctctcattgcttccatcttctcaaccatggccgt |
33452608 |
T |
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| Q |
211 |
ggcaaaagattttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
298 |
Q |
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| T |
33452607 |
ggcaaaagattttgtagttggagatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
33452520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 33400207 - 33400055
Alignment:
| Q |
146 |
atggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggtt |
245 |
Q |
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| T |
33400207 |
atggctctttctcgttctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggagatgaaagtggtt |
33400108 |
T |
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| Q |
246 |
ggactactt-tgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
298 |
Q |
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| T |
33400107 |
ggac-acttggggttgattaccaagcttgggctgcaaacaaggtctttcgtctc |
33400055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 33397122 - 33397030
Alignment:
| Q |
146 |
atggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaa |
238 |
Q |
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| T |
33397122 |
atggctctttctcgtgttctttttctctttgctctcattgctactatcttttcaaccatggctgtggcaaaagattttgtagttggagatgaa |
33397030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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