View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20712_low_24 (Length: 292)

Name: NF20712_low_24
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20712_low_24
NF20712_low_24
[»] chr4 (7 HSPs)
chr4 (147-216)||(52003066-52003135)
chr4 (1-41)||(2624839-2624880)
chr4 (1-41)||(10442811-10442852)
chr4 (1-41)||(22199263-22199304)
chr4 (1-41)||(31078841-31078882)
chr4 (1-41)||(36072949-36072990)
chr4 (1-41)||(49387910-49387951)
[»] chr5 (4 HSPs)
chr5 (1-41)||(14138670-14138711)
chr5 (1-39)||(8145379-8145418)
chr5 (1-41)||(3522028-3522069)
chr5 (1-41)||(6043533-6043574)
[»] chr2 (3 HSPs)
chr2 (1-41)||(13354848-13354889)
chr2 (1-41)||(21936083-21936124)
chr2 (1-40)||(31174856-31174896)
[»] chr3 (2 HSPs)
chr3 (3-41)||(8320608-8320647)
chr3 (1-41)||(6041886-6041927)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-41)||(11623-11664)
[»] chr8 (5 HSPs)
chr8 (1-41)||(15187562-15187603)
chr8 (1-41)||(24211575-24211616)
chr8 (1-41)||(32064747-32064788)
chr8 (1-41)||(34665384-34665425)
chr8 (1-41)||(42755064-42755105)
[»] chr7 (6 HSPs)
chr7 (1-41)||(4974757-4974798)
chr7 (1-41)||(15329275-15329316)
chr7 (1-41)||(15577872-15577913)
chr7 (1-41)||(42611813-42611854)
chr7 (1-41)||(45637714-45637755)
chr7 (1-41)||(48880949-48880990)
[»] chr6 (3 HSPs)
chr6 (1-41)||(28675150-28675191)
chr6 (1-41)||(33695349-33695390)
chr6 (1-41)||(33696698-33696739)
[»] chr1 (2 HSPs)
chr1 (1-41)||(25973416-25973457)
chr1 (1-41)||(40214990-40215031)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 52003135 - 52003066
Alignment:
Q  147 aagtgtaggaaggtatattttccttctattttatttttatagattggttccatctcttatctttgcttgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52003135 aagtgtaggaaggtatattttccttctattttatttttatagattggttccatctcttatctttgcttgg 52003066  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2624880 - 2624839
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  2624880 tgaaattttcttgataaaatctttcttgatatatagcattgc 2624839  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10442811 - 10442852
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  10442811 tgaaattttcttgataaaatctttcttgatatatagcattgc 10442852  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22199304 - 22199263
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  22199304 tgaaattttcttgataaaatctttcttgatatatagcattgc 22199263  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31078841 - 31078882
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  31078841 tgaaattttcttgataaaatctttcttgatatatagcattgc 31078882  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36072990 - 36072949
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  36072990 tgaaattttcttgataaaatctttcttgatatatagcattgc 36072949  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49387910 - 49387951
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  49387910 tgaaattttcttgataaaatctttcttgatatatagcattgc 49387951  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14138711 - 14138670
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  14138711 tgaaattttcttgataaaatctttcttgatatataacattgc 14138670  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8145418 - 8145379
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacatt 39  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8145418 tgaaattttcttgataaaatctttcttgatatataacatt 8145379  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3522028 - 3522069
Alignment:
Q  1 tgaaattttcttgataaaatctt-cttgatatataacattgc 41  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  3522028 tgaaattttcttgaaaaaatctttcttgatatataacattgc 3522069  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6043533 - 6043574
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  6043533 tgaaattttcttgataaaatctttcttgatatatagcattgc 6043574  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13354889 - 13354848
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  13354889 tgaaattttcttgataaaatctttcttgatatataacattgc 13354848  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21936124 - 21936083
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  21936124 tgaaattttcttgataaaatctttcttgatatatagcattgc 21936083  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31174856 - 31174896
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattg 40  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  31174856 tgaaattttcttaataaaatctttcttgatatataacattg 31174896  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 8320608 - 8320647
Alignment:
Q  3 aaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  8320608 aaattttcttgataaaatctttcttgatatataacattgc 8320647  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6041927 - 6041886
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  6041927 tgaaattttcttgataaaatctttcttgatatatagcattgc 6041886  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11664 - 11623
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  11664 tgaaattttcttgataaaatctttcttgatatatagcattgc 11623  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15187603 - 15187562
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  15187603 tgaaattttcttgataaaatctttcttgatatatagcattgc 15187562  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24211575 - 24211616
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  24211575 tgaaattttcttgataaaatctttcttgatatatagcattgc 24211616  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32064788 - 32064747
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  32064788 tgaaattttcttgataaaatctttcttgatatatagcattgc 32064747  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34665425 - 34665384
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  34665425 tgaaattttcttgataaaatctttcttgatatatagcattgc 34665384  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42755064 - 42755105
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  42755064 tgaaattttcttgataaaatctttcttgatatatatcattgc 42755105  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4974757 - 4974798
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  4974757 tgaaattttcttgataaaatctttcttgatatatagcattgc 4974798  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15329316 - 15329275
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  15329316 tgaaattttcttgataaaatctttcttgatatatagcattgc 15329275  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15577872 - 15577913
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  15577872 tgaaattttcttgataaaatctttcttgatatatagcattgc 15577913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42611854 - 42611813
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  42611854 tgaaattttcttgataaaatctttcttgatatatagcattgc 42611813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45637755 - 45637714
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  45637755 tgaaattttcttgataaaatctttcttgatatatagcattgc 45637714  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48880949 - 48880990
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  48880949 tgaaattttcttgataaaatctttcttgatatatagcattgc 48880990  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28675191 - 28675150
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  28675191 tgaaattttcttgataaaatctttcttgatatatagcattgc 28675150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33695349 - 33695390
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  33695349 tgaaattttcttgataaaatctttcttgatatatagcattgc 33695390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33696739 - 33696698
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  33696739 tgaaattttcttgataaaatctttcttgatatatagcattgc 33696698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25973457 - 25973416
Alignment:
Q  1 tgaaattttcttgataaaatctt-cttgatatataacattgc 41  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  25973457 tgaaattttcatgataaaatctttcttgatatataacattgc 25973416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40215031 - 40214990
Alignment:
Q  1 tgaaattttcttgataaaatc-ttcttgatatataacattgc 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  40215031 tgaaattttcttgataaaatctttcttgatatatagcattgc 40214990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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