View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_32 (Length: 218)
Name: NF20712_low_32
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 30169504 - 30169682
Alignment:
| Q |
15 |
gagacaataggttgcttttgaagatcagaaccgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattag |
114 |
Q |
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| T |
30169504 |
gagacaataggttgcttttgaagatcagaaccgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattag |
30169603 |
T |
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| Q |
115 |
caacacttgatgaatttgatgaagatgcttcatcctgtgcaggtggagtttccatgacattacgttgaatttgaagatc |
193 |
Q |
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| T |
30169604 |
caacacttgatgaaattgacgaagatgcctcatcctgtgcaggtggaatttccctgacatcaggttgaatttgaagatc |
30169682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 30166396 - 30166545
Alignment:
| Q |
41 |
agaaccgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattagcaacacttgatgaatttgatgaagat |
140 |
Q |
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| T |
30166396 |
agaacggtcaggtatctgaggaggctcctcctgaacagc---catgttttccggggttgtattatcagcattagcaacacttgatgaatttgatgaagat |
30166492 |
T |
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| Q |
141 |
gcttcatcctgtgcaggtggagtttccatgacattacgttgaatttgaagatc |
193 |
Q |
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| T |
30166493 |
gcctctttctgtgcagttggagtttccgagacaataggttgcttttgaagatc |
30166545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 30163678 - 30163763
Alignment:
| Q |
41 |
agaaccgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattagcaacacttgatg |
126 |
Q |
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| T |
30163678 |
agaacggtcaggtatctgaggaggctcctcctgaacagcatccatgttttcgggggttgtatcatcagcattagcaacacatgatg |
30163763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 30184920 - 30185005
Alignment:
| Q |
41 |
agaaccgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattagcaacacttgatg |
126 |
Q |
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| T |
30184920 |
agaacggtcaggtatctgaggaggctcctcctgaacagcatccatgttttcgggggttgtatcatcagcattagcaacacatgatg |
30185005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 30169394 - 30169473
Alignment:
| Q |
46 |
cgtcaggtatctgaggaggctcctcctgaacagcatccatgttttctggggttggatcatcaacattagcaacacttgatgaa |
128 |
Q |
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| T |
30169394 |
cgtcaggtatctgaggaggctcctcctgaacagc---catgttttctggggttgtaacatcagcattagcaacacttgatgaa |
30169473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 30144383 - 30144474
Alignment:
| Q |
102 |
tcatcaacattagcaacacttgatgaatttgatgaagatgcttcatcctgtgcaggtggagtttccatgacattacgttgaatttgaagatc |
193 |
Q |
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| T |
30144383 |
tcatcagcattagcaacacctgatgaatttgatgaagatgccttttcctgtgcagttggaggttccgagacaataggttgattttgaagatc |
30144474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 30187772 - 30187863
Alignment:
| Q |
102 |
tcatcaacattagcaacacttgatgaatttgatgaagatgcttcatcctgtgcaggtggagtttccatgacattacgttgaatttgaagatc |
193 |
Q |
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| T |
30187772 |
tcatcagcattagtaacacctgatgaatttgatgaagatgcctcttcctgtgaagttggagtttccgagacaataggttgattttgaagatc |
30187863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 30172233 - 30172296
Alignment:
| Q |
102 |
tcatcaacattagcaacacttgatgaatttgatgaagatgcttcatcctgtgcaggtggagttt |
165 |
Q |
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| T |
30172233 |
tcatcagcattagcaacacctgatgaatttgaggaagatgcctcttcctgtgcagttggagttt |
30172296 |
T |
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