View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20712_low_5 (Length: 618)
Name: NF20712_low_5
Description: NF20712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20712_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 8356118 - 8355782
Alignment:
| Q |
1 |
atttgagattaaacaaggtaacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattattcttgcctca |
100 |
Q |
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| T |
8356118 |
atttgagattaaacaaggtcacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattattcttgcctca |
8356019 |
T |
|
| Q |
101 |
ttttaattatcattgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatattatttttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8356018 |
ttttaattatcattgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatattatttttgta |
8355919 |
T |
|
| Q |
201 |
gaatttataagatggtagatcaactaaacttaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggannnnnnnctttccgtca |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
8355918 |
gaatttataagatggtagatcaactaaactgaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggatttttttcgttccgtca |
8355819 |
T |
|
| Q |
301 |
ccctattagttactttcaaattcaaaaaagttgtttt |
337 |
Q |
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| T |
8355818 |
ccctattagttactttcaaattcaaaaaagttgtttt |
8355782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 333 - 580
Target Start/End: Complemental strand, 8355761 - 8355517
Alignment:
| Q |
333 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
432 |
Q |
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| T |
8355761 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
8355662 |
T |
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| Q |
433 |
tccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
532 |
Q |
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| T |
8355661 |
tccccgattaaaattctctatccaaacacacttttagtgtagtttttattc---tcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
8355565 |
T |
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| Q |
533 |
cataacaaagtcactatctttccagactagtggtggcgatctggaaca |
580 |
Q |
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| T |
8355564 |
cataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 441 - 609
Target Start/End: Original strand, 8482621 - 8482788
Alignment:
| Q |
441 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
540 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
|
| Q |
541 |
agtcac-tatctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgt |
609 |
Q |
| |
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| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgt |
8482788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 538
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
470 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
538 |
Q |
| |
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||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
493 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
541 |
Q |
| |
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||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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