View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20713_high_12 (Length: 335)

Name: NF20713_high_12
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20713_high_12
NF20713_high_12
[»] chr6 (1 HSPs)
chr6 (24-317)||(26303179-26303472)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 317
Target Start/End: Complemental strand, 26303472 - 26303179
Alignment:
Q  24 acacatattccttgcattataggaattagtcatgcctttggctagctaaatattttcataatcttagtgctttataatgttccactcatgtatactagaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26303472 acacatattccttgcattataggaattagtcatgcctttggctagctaaatattttcataatcttagtgctttataatgttccactcatgtatactagaa 26303373  T
Q  124 atctatgattatttccaacagtaaagttcaataagaaatgttgactaaaataataattgtgatgaacaatatattttggctgctccacttcactcaagca 223  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26303372 atctatgattatttccaacagtaaagttcaataagaaatgttcactaaaataataattgtgatgaacaatatattttggctgctccacttcactcaagca 26303273  T
Q  224 atatgatccatgcatgtgtggcatgactgctactgccacagtgtcagcaggacgatggatgctatactttgatgattcatttgccaaaagatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  26303272 atatgatccatgcatgtgtggcatgactgctactgccacagtgtcagcaagacgatggatgctatactttgatgattcatttgacaaaagatct 26303179  T

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