View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_high_22 (Length: 213)
Name: NF20713_high_22
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 12425383 - 12425207
Alignment:
| Q |
19 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
118 |
Q |
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| T |
12425383 |
atgaaatacctttaaaaactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
12425284 |
T |
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| Q |
119 |
tcatgatagtaatggttttgatttcaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaa |
195 |
Q |
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| T |
12425283 |
tcatgatagtactggttttgattttaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaa |
12425207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 12268302 - 12268478
Alignment:
| Q |
19 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
118 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||| |
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| T |
12268302 |
atgaaatacctataaagactaatttaatattaaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtt |
12268401 |
T |
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| Q |
119 |
tcatgatagtaatggttttgatttcaataaagtgaatgataatagctttcagtatttcccttttggaggaggaagaa |
195 |
Q |
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| T |
12268402 |
tcatgataatactggttttgattttaataaagtgaatgataatagctttcagtacatcccttttggaggaggaagaa |
12268478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 55955056 - 55954877
Alignment:
| Q |
19 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
118 |
Q |
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| T |
55955056 |
atgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtt |
55954957 |
T |
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| Q |
119 |
tcatgatagtaatggttttgatttcaataaagtg---aatgataatagctttcagtatttcccttttggaggaggaagaa |
195 |
Q |
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| T |
55954956 |
taatgatagtactggttttgattttaataaattgaacaataataatagctttgattacatgccttttgggggaggaagaa |
55954877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 55958612 - 55958476
Alignment:
| Q |
19 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
118 |
Q |
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|||||||||| |||||||||| | || ||||||| |||||||| ||||||||||| || |||||| |||||| |||||||||||||| |||||||| |
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| T |
55958612 |
atgaaataccaataaagactaatgtgttagtaaatgcttgggcaatgtgaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtt |
55958513 |
T |
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| Q |
119 |
tcatgatagtaatggttttgatttcaataaagtgaat |
155 |
Q |
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| T |
55958512 |
tcatgacagtaaatattttgattttaataaagtgaat |
55958476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 41795822 - 41795686
Alignment:
| Q |
19 |
atgaaatacctttaaagactaacttaatattaaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtt |
118 |
Q |
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||||||||||| ||||||||| | ||| |||||||||||||||| |||||||||||| || |||| | |||||| || || ||||||| ||||||| |
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| T |
41795822 |
atgaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaatattgatatgatgcagataattttatacataagaggtt |
41795723 |
T |
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| Q |
119 |
tcatgatagtaatggttttgatttcaataaagtgaat |
155 |
Q |
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| T |
41795722 |
tcaggacagtaaagattttgaatttaataaagtgaat |
41795686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 7141631 - 7141710
Alignment:
| Q |
49 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
128 |
Q |
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||||||| |||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
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| T |
7141631 |
taaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
7141710 |
T |
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