View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_high_7 (Length: 395)
Name: NF20713_high_7
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 17243481 - 17243118
Alignment:
| Q |
16 |
agagagagtgccaccaacagtcaaatacaagtaatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgt |
115 |
Q |
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| T |
17243481 |
agagagagtgccaccaacagacaaatacaagtaatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgt |
17243382 |
T |
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| Q |
116 |
tctccacccacatcaacataacaacctaattgatttttcacatcacaatcagatactacaattccagacccatttctataccaatttagttgagtcatat |
215 |
Q |
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| T |
17243381 |
tctccacccacatcaacataacaacctaatggatttttcacatcacaatcagatactacaattccagacccatttctataccaattgagttgagtcatat |
17243282 |
T |
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| Q |
216 |
tcacaacaatgccattttgtgtcatggcttgtcctaaaaccgaatgtgcttgtcctctaggggatatggtaaaagggtgaggaagagagtttgaatagtt |
315 |
Q |
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| T |
17243281 |
tcacaacaattccattttgtgtcatggcttgtcctaaaaccgaatgtgcttgtcctctaggggatatggtaaaagagtgaggaagagagtttgaatagtt |
17243182 |
T |
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| Q |
316 |
tatcaagttagtaatatcactaattgatgttggttccaaaactgcaaagggactttcatgaata |
379 |
Q |
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| T |
17243181 |
tatcaagttagcaatatcactaattgatgttggttccaaaactgcaaagggattttcatgaata |
17243118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 17275653 - 17275565
Alignment:
| Q |
47 |
taatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacata |
135 |
Q |
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| T |
17275653 |
taatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacata |
17275565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 52443489 - 52443404
Alignment:
| Q |
50 |
tcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacata |
135 |
Q |
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| T |
52443489 |
tcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaacatcaatccatagttgttctcctccaacatcaacata |
52443404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 52630597 - 52630637
Alignment:
| Q |
20 |
agagtgccaccaacagtcaaatacaagtaatcagtccaaga |
60 |
Q |
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| T |
52630597 |
agagtaccacccacagacaaatacaagtaatcagtccaaga |
52630637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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