View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20713_high_9 (Length: 385)

Name: NF20713_high_9
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20713_high_9
NF20713_high_9
[»] chr7 (4 HSPs)
chr7 (35-292)||(6855231-6855488)
chr7 (276-370)||(6855502-6855596)
chr7 (58-112)||(39308655-39308709)
chr7 (58-106)||(30107185-30107233)
[»] chr8 (4 HSPs)
chr8 (58-106)||(15809988-15810036)
chr8 (58-112)||(4924067-4924121)
chr8 (56-85)||(13831622-13831651)
chr8 (58-106)||(10097997-10098045)
[»] chr1 (4 HSPs)
chr1 (56-104)||(29074944-29074992)
chr1 (58-104)||(27687303-27687349)
chr1 (60-106)||(33131585-33131631)
chr1 (58-103)||(22181398-22181443)
[»] chr5 (2 HSPs)
chr5 (56-111)||(18890553-18890608)
chr5 (65-106)||(16181766-16181807)
[»] chr4 (4 HSPs)
chr4 (58-97)||(12567202-12567241)
chr4 (58-112)||(462020-462074)
chr4 (58-104)||(17512352-17512398)
chr4 (56-104)||(5618602-5618650)
[»] chr6 (1 HSPs)
chr6 (56-85)||(16464444-16464473)
[»] chr3 (3 HSPs)
chr3 (58-103)||(52206855-52206900)
chr3 (58-106)||(24569105-24569153)
chr3 (56-112)||(29595726-29595782)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 35 - 292
Target Start/End: Original strand, 6855231 - 6855488
Alignment:
Q  35 tttataaatgttatcagaaagaataaataatattaattttaccattaaaataaattcaactaatcattttctcaaaaagcgcacacaacccaaaaactaa 134  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6855231 tttataaatgttatcagagagaataaataatactaattttaccattaaaataaattcaactaatcattttctcataaagcgcacacaacccaaaaactaa 6855330  T
Q  135 cataagaacggagtactcaaacaaaaatatgtgacaaatatttaacatagttaaatatttaaaaaatgacaaatattggttgataatccaaatatttgac 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  6855331 cataagaacggagtactcaaacaaaaatatgtgacaaatatttaacatagttaaatatttaaaaaatgacaaatattggtcgctaatccgaatatttgac 6855430  T
Q  235 acttatttattaatttgtctaatcttacagcaagtcaccctaaatgtcacggtttttt 292  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  6855431 acttatttattaatttgtctaatcttaaagcaagttaccctaaatatcacggtttttt 6855488  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 6855502 - 6855596
Alignment:
Q  276 aaatgtcacggttttttgtcactatcgtatatatacataaagtaaaggataaatatttattactaatacataaaataaagataagcgttatatat 370  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6855502 aaatgtcacggttttttgtcactatcgtatatatacataaagtagaggataaatatttattactaatacataaaataaagataagcattatatat 6855596  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 39308655 - 39308709
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttctcaaaaa 112  Q
    ||||||||||||||||||| |||||||| || ||| ||||||||||||| |||||    
T  39308655 taaataatattaattttactattaaaatcaactcatctaatcattttcttaaaaa 39308709  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 30107185 - 30107233
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttct 106  Q
    |||||||||||||||||||||||||||| || | ||||||| |||||||    
T  30107185 taaataatattaattttaccattaaaatcaactaaactaattattttct 30107233  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 15810036 - 15809988
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttct 106  Q
    ||||||||||||||| |||||||||||| || | |||||||||||||||    
T  15810036 taaataatattaattctaccattaaaatcaactgaactaatcattttct 15809988  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 4924121 - 4924067
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttctcaaaaa 112  Q
    ||||||||| ||||||||||||||||||| |  |||||||| ||||||| |||||    
T  4924121 taaataatactaattttaccattaaaatatacacaactaataattttcttaaaaa 4924067  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 13831651 - 13831622
Alignment:
Q  56 aataaataatattaattttaccattaaaat 85  Q
    ||||||||||||||||||||||||||||||    
T  13831651 aataaataatattaattttaccattaaaat 13831622  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 10098045 - 10097997
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttct 106  Q
    ||||| |||||||||||||||| ||||| ||| ||| ||||||||||||    
T  10098045 taaatgatattaattttaccatcaaaatcaatacaattaatcattttct 10097997  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 29074944 - 29074992
Alignment:
Q  56 aataaataatattaattttaccattaaaataaattcaactaatcatttt 104  Q
    ||||||| |||||||||||||||||||||| ||  ||||||||||||||    
T  29074944 aataaatgatattaattttaccattaaaatcaacacaactaatcatttt 29074992  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 27687303 - 27687349
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcatttt 104  Q
    ||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  27687303 taaataatattaattttaccattgaaatcaacacaactaatcatttt 27687349  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 33131585 - 33131631
Alignment:
Q  60 aataatattaattttaccattaaaataaattcaactaatcattttct 106  Q
    |||||||||||||||  ||||||||| ||||||| ||||||||||||    
T  33131585 aataatattaattttgacattaaaatcaattcaaataatcattttct 33131631  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 22181398 - 22181443
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattt 103  Q
    ||||| ||||||||||||||||| |||| || ||||||||||||||    
T  22181398 taaatgatattaattttaccattgaaatgaactcaactaatcattt 22181443  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 18890608 - 18890553
Alignment:
Q  56 aataaataatattaattttaccattaaaataaattcaactaatcattttctcaaaa 111  Q
    ||||||| ||| |||||||||||||||||  || ||||||||||||||||| ||||    
T  18890608 aataaatgatactaattttaccattaaaaacaactcaactaatcattttcttaaaa 18890553  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 16181807 - 16181766
Alignment:
Q  65 tattaattttaccattaaaataaattcaactaatcattttct 106  Q
    |||||||||||||||| |||| |||| |||||||||||||||    
T  16181807 tattaattttaccattgaaatcaatttaactaatcattttct 16181766  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 12567241 - 12567202
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaa 97  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  12567241 taaatgatattaattttaccattaaaatcaattcaactaa 12567202  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 462020 - 462074
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttctcaaaaa 112  Q
    |||||||||||| |||||||||| |||| ||| ||| |||||||||||| |||||    
T  462020 taaataatattacttttaccattgaaatcaatacaattaatcattttcttaaaaa 462074  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 17512398 - 17512352
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcatttt 104  Q
    ||||| |||||||||||||| ||||||| || |||||||||||||||    
T  17512398 taaattatattaattttacctttaaaatcaactcaactaatcatttt 17512352  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5618602 - 5618650
Alignment:
Q  56 aataaataatattaattttaccattaaaataaattcaactaatcatttt 104  Q
    |||||||||| ||||||||||||||||||| ||  ||||| ||||||||    
T  5618602 aataaataattttaattttaccattaaaatcaacacaactcatcatttt 5618650  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 16464444 - 16464473
Alignment:
Q  56 aataaataatattaattttaccattaaaat 85  Q
    ||||||||||||||||||||||||||||||    
T  16464444 aataaataatattaattttaccattaaaat 16464473  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 52206900 - 52206855
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattt 103  Q
    ||||| ||||||||||||||||| |||| |||| ||||||||||||    
T  52206900 taaatgatattaattttaccattgaaatcaatttaactaatcattt 52206855  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 24569153 - 24569105
Alignment:
Q  58 taaataatattaattttaccattaaaataaattcaactaatcattttct 106  Q
    ||||||||||||||||||||||| |||| ||  ||| ||||||||||||    
T  24569153 taaataatattaattttaccattgaaatcaacacaattaatcattttct 24569105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 29595782 - 29595726
Alignment:
Q  56 aataaataatattaattttaccattaaaataaattcaactaatcattttctcaaaaa 112  Q
    ||||||||||||||||||||| |||||||| |||  || ||| |||||||| |||||    
T  29595782 aataaataatattaattttactattaaaatcaatataattaaccattttcttaaaaa 29595726  T

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