View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_11 (Length: 369)
Name: NF20713_low_11
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 10215580 - 10215405
Alignment:
| Q |
2 |
taataaaatgttgaggacaagaaaaactcacctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctacaacta |
101 |
Q |
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| T |
10215580 |
taataaaatgttgaggacaagaaaa-ctcacctgaggagaatttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctacaacta |
10215482 |
T |
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| Q |
102 |
aagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
178 |
Q |
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| T |
10215481 |
aagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
10215405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 10215381 - 10215321
Alignment:
| Q |
193 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
253 |
Q |
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| T |
10215381 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
10215321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 10099111 - 10099175
Alignment:
| Q |
15 |
aggacaagaaaaactc--acctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatg |
79 |
Q |
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| T |
10099111 |
aggacaagaaaaactctcacctgaggagagtttctactc--aatattagaagaacgaaaagatgatg |
10099175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 10215256 - 10215224
Alignment:
| Q |
318 |
gatcccaagatataaatttatttgagtagtaat |
350 |
Q |
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| T |
10215256 |
gatcccaagatataaatttatttgagtagtaat |
10215224 |
T |
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