View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_14 (Length: 328)
Name: NF20713_low_14
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 3585294 - 3585592
Alignment:
| Q |
19 |
agttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggagctt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
3585294 |
agttcacggtttttggcaaatgtctctgggtcggcagaaagcccagcagtatcccaaccataatcaccaggaaattctcccgtgaggtaagatggagctt |
3585393 |
T |
|
| Q |
119 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
3585394 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattct |
3585493 |
T |
|
| Q |
219 |
tcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585494 |
tcccatcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
3585592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 3575924 - 3575626
Alignment:
| Q |
19 |
agttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggagctt |
118 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||| || |||||| |||||| ||||| |||| ||| | ||||| ||||||||||||| |
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|
| T |
3575924 |
agttcacggttcttggcaaatgtctctgggtcagcagaaagcccagcagtgtcccaaccatagtcaccaggaaattcaccagtgagataagatggagctt |
3575825 |
T |
|
| Q |
119 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattct |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||| ||||||||||||||||| ||||||| |
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|
| T |
3575824 |
caccagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattct |
3575725 |
T |
|
| Q |
219 |
tcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||| | ||||||| ||||||| |
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|
| T |
3575724 |
tcccatcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccattctagtatt |
3575626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 3572640 - 3572346
Alignment:
| Q |
19 |
agttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggagctt |
118 |
Q |
| |
|
|||||| ||||||| | || ||||| || || |||||||| ||| || |||||| ||||| |||||||||| ||| | || |||||||||||||||| |
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|
| T |
3572640 |
agttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtcccatccatagtcaccgggaaattcaccagtaaggtaagatggagctt |
3572541 |
T |
|
| Q |
119 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| | ||||| |
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|
| T |
3572540 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattct |
3572441 |
T |
|
| Q |
219 |
tcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtag |
313 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||||||||||||||| |||| |
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|
| T |
3572440 |
tcccatgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtag |
3572346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 3563945 - 3563647
Alignment:
| Q |
19 |
agttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggagctt |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| ||| || |||||| ||| || ||||| |||| ||| | |||||||| ||||| |||| |
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|
| T |
3563945 |
agttcacggtttttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccaggaaattcaccggtgaggtaggatggggctt |
3563846 |
T |
|
| Q |
119 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattct |
218 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| | | |||||||||||||| ||||||||| ||| ||| |
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| T |
3563845 |
caccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactct |
3563746 |
T |
|
| Q |
219 |
tcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
317 |
Q |
| |
|
||||| | ||| |||| | ||||| ||||||||||||||| |||| || || | ||||||||| ||||||| |||||||||||| |||||| ||||||| |
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|
| T |
3563745 |
tcccaccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagtatt |
3563647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 3569593 - 3569295
Alignment:
| Q |
19 |
agttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggagctt |
118 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||| ||| || |||||| ||| || ||||| || | ||| | |||||||| ||||| |||| |
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|
| T |
3569593 |
agttcacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtcccaaccgtagtcaccagggaattcacctgtgaggtaggatggggctt |
3569494 |
T |
|
| Q |
119 |
caccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattct |
218 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||| ||| ||| |
|
|
| T |
3569493 |
caccggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactct |
3569394 |
T |
|
| Q |
219 |
tcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
317 |
Q |
| |
|
||||| | ||| |||| ||||||| |||||||| |||||| |||| || || | ||||||||| ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
3569393 |
tcccaccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccattgtggtatt |
3569295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 13275876 - 13275583
Alignment:
| Q |
16 |
tcaagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggag |
115 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || |||||||| ||| || | | || |||||||||||| || | ||| | || | ||||||||| | |
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|
| T |
13275876 |
tcaagttcacggttttttgcaaatgtctctggatcagcagaaagtccagcagtattccaaccataatcaccagggaattcaccagtcaagtaagatgggg |
13275777 |
T |
|
| Q |
116 |
cttcaccagagaatggacccaagtacttgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgat |
215 |
Q |
| |
|
| |||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||||||||| ||||| ||| |
|
|
| T |
13275776 |
cctcaccaaagaatgggcccaggtacttgacacggtctggaccataccatggacttcctgaagaa---actttctttgtggttgtttt-ttcatggtgac |
13275681 |
T |
|
| Q |
216 |
tcttcccatcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtag |
313 |
Q |
| |
|
||||| || |||||||| | || || ||| ||| |||||| |||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
13275680 |
ccttccaataccaaggtcttgggtagaggggttaagtttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgtag |
13275583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 38356963 - 38356815
Alignment:
| Q |
16 |
tcaagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgggaatttctctcgtgaggtaagatggag |
115 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||| |||||||| ||| || |||||| || || ||||| || | |||| || | |||||| || | |
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|
| T |
38356963 |
tcaagttcacggttcttggcgaatgtctctgggtcagcagaaagtccagcagtgtcccatccgtagtcacctgggaactctccagtcaagtaagacgggg |
38356864 |
T |
|
| Q |
116 |
cttcaccagagaatggacccaagtacttgacacggtctggaccgtacca |
164 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| |||||||| |
|
|
| T |
38356863 |
gctcaccagagaatgggcctaagtacttaacacggtctgggccgtacca |
38356815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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