View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_20 (Length: 241)
Name: NF20713_low_20
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35691206 - 35690982
Alignment:
| Q |
1 |
agatgataaatggaaaaaacaaatttaaacacgtccagcataacaaactgggcccacccgcgactctacaacttctcctgaaatttatacactctcacac |
100 |
Q |
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| T |
35691206 |
agatgataaattgaaaaaacaaatttaaacacgtccaacataacaaactgggcccacccgcgactctacaacttctcctgaaatttatacactctcacac |
35691107 |
T |
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| Q |
101 |
acaacacactcttttattctctgattttccgtgaaaattcagtgcaatcaaaat------caaattacacattgtcatttcagggtttacacttttttga |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35691106 |
acaacacactcttttattctctgattttccgtgaaaattcagtgcaatcaaaatcaaaatcaaattacacattgtcatttcagggtttacacttttttga |
35691007 |
T |
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| Q |
195 |
ccactacctccttcttcttctccat |
219 |
Q |
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||||||||||||||||||||||||| |
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| T |
35691006 |
ccactacctccttcttcttctccat |
35690982 |
T |
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