View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20713_low_21 (Length: 219)

Name: NF20713_low_21
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20713_low_21
NF20713_low_21
[»] chr3 (8 HSPs)
chr3 (1-158)||(8139798-8139955)
chr3 (13-138)||(8163717-8163842)
chr3 (174-219)||(8139732-8139777)
chr3 (172-213)||(48688137-48688178)
chr3 (176-219)||(43630419-43630462)
chr3 (173-214)||(5117230-5117271)
chr3 (174-219)||(27432251-27432296)
chr3 (178-214)||(30200848-30200884)
[»] chr5 (5 HSPs)
chr5 (176-215)||(42854321-42854360)
chr5 (178-219)||(39143731-39143772)
chr5 (177-217)||(29225118-29225158)
chr5 (181-214)||(21657404-21657437)
chr5 (178-214)||(23118054-23118090)
[»] chr4 (10 HSPs)
chr4 (178-219)||(36479008-36479049)
chr4 (176-218)||(8734868-8734910)
chr4 (177-219)||(45029607-45029649)
chr4 (178-219)||(1657033-1657074)
chr4 (176-213)||(21266883-21266920)
chr4 (181-214)||(39842018-39842051)
chr4 (178-219)||(44221464-44221505)
chr4 (181-214)||(46434766-46434799)
chr4 (181-217)||(9783918-9783954)
chr4 (178-210)||(34968012-34968044)
[»] chr7 (2 HSPs)
chr7 (167-215)||(34897531-34897579)
chr7 (171-217)||(14623481-14623527)
[»] chr6 (6 HSPs)
chr6 (172-214)||(10497149-10497191)
chr6 (178-214)||(884072-884108)
chr6 (181-213)||(1989049-1989081)
chr6 (178-214)||(9333983-9334019)
chr6 (177-213)||(10778863-10778899)
chr6 (178-210)||(35110080-35110112)
[»] chr2 (2 HSPs)
chr2 (177-219)||(231595-231637)
chr2 (178-218)||(4238777-4238817)
[»] chr1 (4 HSPs)
chr1 (181-219)||(8266192-8266230)
chr1 (176-217)||(35632918-35632959)
chr1 (178-219)||(37705142-37705183)
chr1 (181-217)||(33175280-33175316)
[»] chr8 (1 HSPs)
chr8 (177-218)||(21557451-21557492)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 8139955 - 8139798
Alignment:
Q  1 gtaccaccattatatccattaatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaagtcagcat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8139955 gtaccaccattatatccattgatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaagtcagcat 8139856  T
Q  101 agactgcgaaatccttcctgttttatccattaaattaagaataagtttctatattaac 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8139855 agactgcgaaatccttcctgttttatccattaaattaagaataagtttatatattaac 8139798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 8163842 - 8163717
Alignment:
Q  13 tatccattaatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaat 112  Q
    ||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||    
T  8163842 tatccattaatggtgtaggaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaat 8163743  T
Q  113 ccttcctgttttatccattaaattaa 138  Q
    ||||||| |||||| |||||||||||    
T  8163742 ccttcctattttattcattaaattaa 8163717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 8139777 - 8139732
Alignment:
Q  174 ggaattcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||    
T  8139777 ggaattcgaacctcagaccttgcatatattatgcattgtccatacc 8139732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 48688178 - 48688137
Alignment:
Q  172 ctggaattcgaacctcaaaccttacatagattatgcattgtc 213  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  48688178 ctggagttcgaacctcaaaccttacatatattatgcattgtc 48688137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 43630419 - 43630462
Alignment:
Q  176 aattcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||    
T  43630419 aatttgaacctcaaaccttacatatattatgcattgttcatacc 43630462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 5117271 - 5117230
Alignment:
Q  173 tggaattcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    |||| |||||||||||||||||||||| |||||| |||||||    
T  5117271 tggacttcgaacctcaaaccttacatatattatgtattgtcc 5117230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 27432296 - 27432251
Alignment:
Q  174 ggaattcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||||| || |||||||||| |||||||||||| ||||||    
T  27432296 ggaattcgaaccccataccttacatatattatgcattgtacatacc 27432251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 30200884 - 30200848
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  30200884 ttcgaacctcaaaccttgcatatattatgcattgtcc 30200848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 42854321 - 42854360
Alignment:
Q  176 aattcgaacctcaaaccttacatagattatgcattgtcca 215  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  42854321 aattcgaacctcaaaccttacatatattatgcattgtcca 42854360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 39143772 - 39143731
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  39143772 ttcgaacctcaaaccttacatatattatgcaatgtccatacc 39143731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 29225118 - 29225158
Alignment:
Q  177 attcgaacctcaaaccttacatagattatgcattgtccata 217  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  29225118 attcgaacctcaaaccttacatatattatacattgtccata 29225158  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 21657404 - 21657437
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtcc 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  21657404 gaacctcaaaccttacatatattatgcattgtcc 21657437  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 23118054 - 23118090
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  23118054 ttcgaaccccaaaccttacatatattatgcattgtcc 23118090  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 36479049 - 36479008
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  36479049 ttcgaacctcgaaccttacatatattatgcattgtccatacc 36479008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 8734910 - 8734868
Alignment:
Q  176 aattcgaacctcaaaccttacatagattatgcattgtccatac 218  Q
    |||| |||||||| |||||||||| ||||||||||||||||||    
T  8734910 aatttgaacctcagaccttacatatattatgcattgtccatac 8734868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 45029607 - 45029649
Alignment:
Q  177 attcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||    
T  45029607 attcgaaccccaaaccttacatatattatgcattgtccttacc 45029649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 1657033 - 1657074
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||| ||||||||||||| |||||||||||||| ||||    
T  1657033 ttcgaaccccaaaccttacatatattatgcattgtccttacc 1657074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 21266883 - 21266920
Alignment:
Q  176 aattcgaacctcaaaccttacatagattatgcattgtc 213  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  21266883 aattcgaaccccaaaccttacatatattatgcattgtc 21266920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 39842018 - 39842051
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtcc 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  39842018 gaacctcaaaccttacatatattatgcattgtcc 39842051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 44221505 - 44221464
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    ||||||||||| ||||| |||| |||||||||||||||||||    
T  44221505 ttcgaacctcagaccttgcatatattatgcattgtccatacc 44221464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 46434766 - 46434799
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtcc 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  46434766 gaacctcaaaccttacatatattatgcattgtcc 46434799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9783954 - 9783918
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtccata 217  Q
    |||||||| |||||||||| |||||||||||||||||    
T  9783954 gaacctcagaccttacatatattatgcattgtccata 9783918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 34968012 - 34968044
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcatt 210  Q
    |||||||||||||||||||||| ||||||||||    
T  34968012 ttcgaacctcaaaccttacatatattatgcatt 34968044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 34897579 - 34897531
Alignment:
Q  167 ggtagctggaattcgaacctcaaaccttacatagattatgcattgtcca 215  Q
    ||||||| | ||| ||||||||||||||||||| |||||||||||||||    
T  34897579 ggtagctaggatttgaacctcaaaccttacatatattatgcattgtcca 34897531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 14623481 - 14623527
Alignment:
Q  171 gctggaattcgaacctcaaaccttacatagattatgcattgtccata 217  Q
    ||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  14623481 gctggaatttgaaccccaaaccttacatattttatgcattgtccata 14623527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 10497149 - 10497191
Alignment:
Q  172 ctggaattcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||    
T  10497149 ctgggattcgaaccgcaaaccttacatatattatgcattgtcc 10497191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 884072 - 884108
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    |||||||||||||||||||||| || |||||||||||    
T  884072 ttcgaacctcaaaccttacatatatcatgcattgtcc 884108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 1989049 - 1989081
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtc 213  Q
    ||||||||||||||||||| |||||||||||||    
T  1989049 gaacctcaaaccttacatatattatgcattgtc 1989081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 9333983 - 9334019
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtcc 214  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  9333983 ttcgaaccccaaaccttacatatattatgcattgtcc 9334019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 10778899 - 10778863
Alignment:
Q  177 attcgaacctcaaaccttacatagattatgcattgtc 213  Q
    |||||||||||| |||||||||| |||||||||||||    
T  10778899 attcgaacctcagaccttacatatattatgcattgtc 10778863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 35110112 - 35110080
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcatt 210  Q
    |||||||||||||||||||||| ||||||||||    
T  35110112 ttcgaacctcaaaccttacatatattatgcatt 35110080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 231595 - 231637
Alignment:
Q  177 attcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||||||||||| |||| |||||| ||||||||||||    
T  231595 attcgaacctcaaaccttgcatatattatgtattgtccatacc 231637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4238817 - 4238777
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatac 218  Q
    |||||||| | ||||||||||| ||||||||||||||||||    
T  4238817 ttcgaaccccgaaccttacatatattatgcattgtccatac 4238777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 8266192 - 8266230
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  8266192 gaacctcaaaccttgcatacattatgcattgtccatacc 8266230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 35632959 - 35632918
Alignment:
Q  176 aattcgaacctcaaaccttacatagattatgcattgtccata 217  Q
    |||| ||||||||||||||| ||| |||||||||||||||||    
T  35632959 aatttgaacctcaaaccttatatatattatgcattgtccata 35632918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 37705183 - 37705142
Alignment:
Q  178 ttcgaacctcaaaccttacatagattatgcattgtccatacc 219  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  37705183 ttcgaacctcaaacattgcatatattatgcattgtccatacc 37705142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 33175316 - 33175280
Alignment:
Q  181 gaacctcaaaccttacatagattatgcattgtccata 217  Q
    |||||||| |||||||||| |||||||||||||||||    
T  33175316 gaacctcataccttacatatattatgcattgtccata 33175280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 21557492 - 21557451
Alignment:
Q  177 attcgaacctcaaaccttacatagattatgcattgtccatac 218  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  21557492 attcgaacctcggaccttacatatattatgcattgtccatac 21557451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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