View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_22 (Length: 216)
Name: NF20713_low_22
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 28475533 - 28475339
Alignment:
| Q |
6 |
tacaaagatcaaatataaaa-gagattaaaaattcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaagagcaa |
104 |
Q |
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| T |
28475533 |
tacaaagatcaaatataaaatgagattaaaagttcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaagagcaa |
28475434 |
T |
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| Q |
105 |
cagataactccaccactcccaagcttgagctaagatgcccaccagtgtctgacacactgtgtacaatgtcagccctcaattcagcagccaattgt |
199 |
Q |
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| T |
28475433 |
ctgataactccaccactcccaagcttgagctaagatgcccaccagtgtctgacacactgtgtacaatgtcagccctcaattcagcagccaattgt |
28475339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 28466986 - 28466789
Alignment:
| Q |
1 |
gaaattacaaagatcaaatataaaagagattaaaaattcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaaga |
100 |
Q |
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|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28466986 |
gaaattacaa-gataaaatataaaagagattaaaagttcaacctgatggccaacatcccatatgatcttgtcatccggagtgtcgaaaacatgatgaaga |
28466888 |
T |
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| Q |
101 |
gcaacagataactccaccactcccaagcttgagctaagatgcccaccagtgtctgacacactgtgtacaatgtcagccctcaattcagcagccaattgt |
199 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28466887 |
gcaactgataactccaccactcccaagcttgagctaagatgaccaccggtgtctgacacactgtgtacaatgtcagccctcaattcagcagccaattgt |
28466789 |
T |
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