View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20713_low_3 (Length: 721)
Name: NF20713_low_3
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_3 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 158 - 705
Target Start/End: Complemental strand, 11789699 - 11789152
Alignment:
| Q |
158 |
gatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatca |
257 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11789699 |
gatgacacctttatgattataaatgtaagattttgcaaagtaaatgaacaaagtaaacccaatgacacttaatccagaaagtagccaataaaagtaatca |
11789600 |
T |
|
| Q |
258 |
agatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttc |
357 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11789599 |
agatgtgtcttattgatattgtcacaaaaccaactatcatgtccatctttgccactaaaatgttctatcaaagaaattagaaagccacttagaaagcttc |
11789500 |
T |
|
| Q |
358 |
caacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacaccaacaatagtaaaaac |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
11789499 |
caacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaagaccaaccatagtaaaaac |
11789400 |
T |
|
| Q |
458 |
ctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctacc |
557 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
11789399 |
ctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacaattgcgtttggatcatcaacaagaccatgctcttgtgctatc |
11789300 |
T |
|
| Q |
558 |
ttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttgaagcattgtgatacctgagggtt |
657 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
11789299 |
tttagtcttttcatctcaacaaaggctgcaagtactactgtgaatatagatagaaaaattccagtgccaattctttgaagcattgtaatacctgaggact |
11789200 |
T |
|
| Q |
658 |
ttccagttatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11789199 |
ttccagttataactcttgctagtggcacgaataaacggtcgtagatag |
11789152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 158 - 703
Target Start/End: Complemental strand, 11699871 - 11699326
Alignment:
| Q |
158 |
gatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatca |
257 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11699871 |
gatgacacttttatgattataaatgtaagattttgcaaagtaaacaaacaaagtaaaccctaacacacttaatccagcaagtaaccaataaaagtaatca |
11699772 |
T |
|
| Q |
258 |
agatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699771 |
agatgtgccttattgatattgtcacaaaaccaactttcatgaccatctttgccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttc |
11699672 |
T |
|
| Q |
358 |
caacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacaccaacaatagtaaaaac |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
11699671 |
caacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaagaccaaccatggtaaaaac |
11699572 |
T |
|
| Q |
458 |
ctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctacc |
557 |
Q |
| |
|
|||||| || |||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699571 |
ctcagaaacaccaaacaaaacatactgaggaatcaaccaccctatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctact |
11699472 |
T |
|
| Q |
558 |
ttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttgaagcattgtgatacctgagggtt |
657 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11699471 |
tttagtcttttattctcaacaaaggctgcaagtactactgtgaatatagatagaaaaattccagtgccaattctttgaagcattgtgatacctgaggttt |
11699372 |
T |
|
| Q |
658 |
ttccagttatattccttgctagtggcacgaataaacggtcgtagat |
703 |
Q |
| |
|
| || |||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
11699371 |
taccggttatagctcttgctagtggcacaaatatgcggtcgtagat |
11699326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Complemental strand, 11793155 - 11792725
Alignment:
| Q |
12 |
agagaggaactagacaaatgacaatgataccacatctttacttaatttttaggtatcacgaaattctaacatgtgcttggtacaaatatctatactattt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
11793155 |
agagaggaactagacaaatgacaatgataccacatctttacttaatttttaagtatcacgaaattctaacatgtgcttggtacggatatctatcctactt |
11793056 |
T |
|
| Q |
112 |
gtataaaatatgacatattacaaaaactaatcaatgtctatc---atgagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11793055 |
gtataaaatatgacatattacaaaaactaatcaatgtctatccttatgagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaa |
11792956 |
T |
|
| Q |
209 |
agtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11792955 |
agtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgaccatctttg |
11792856 |
T |
|
| Q |
309 |
ccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11792855 |
ccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcat |
11792756 |
T |
|
| Q |
409 |
ttgggacttgatcatagaaaaattcctgaac |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11792755 |
ttgggacttgatcatagaaaaattcctgaac |
11792725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 165 - 705
Target Start/End: Complemental strand, 11678679 - 11678139
Alignment:
| Q |
165 |
cctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
11678679 |
cctttgtgattataaatgtaagattttgcaaagtaaacgaacaaagtaaaccccatcaaacttaatccagcaagcaaccaataaaagtaatcaaaatgtg |
11678580 |
T |
|
| Q |
265 |
ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttccaacacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11678579 |
ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgttctatcaatgaaatgagaaagccactaagaaagcttccaacacc |
11678480 |
T |
|
| Q |
365 |
aataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacaccaacaatagtaaaaacctcagat |
464 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
11678479 |
aacaatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaagaccaaccatagtaaaaacctctgaa |
11678380 |
T |
|
| Q |
465 |
actccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtc |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| || |||| |
|
|
| T |
11678379 |
actccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcattaggatcatcaacaataccatattcttgtgctatttttagtc |
11678280 |
T |
|
| Q |
565 |
ttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttgaagcattgtgatacctgagggttttccagt |
664 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
11678279 |
ttttcatctcaacaaaggctgcaaatgttaccgtgattatcgatataaaaattccagtgccaattctttgaagcattgtgatgccagagggttttccggt |
11678180 |
T |
|
| Q |
665 |
tatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
||| |||||||| |||||||||| ||||| ||||||| |
|
|
| T |
11678179 |
gatagctcttgctagcggcacgaatatgcggtcatagatag |
11678139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 165 - 705
Target Start/End: Complemental strand, 11686958 - 11686418
Alignment:
| Q |
165 |
cctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacacttaatccagcaagtatccaataaaagtaatcaagatgtg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
11686958 |
cctttgtgattataaatgtaagattttgcaaagtaaacgaacaaagtaaaccccatcaaacttaatccagcaagcaaccaataaaagtaatcaaaatgtg |
11686859 |
T |
|
| Q |
265 |
ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttctatcaatgaaatgagaaagccacttagaaagcttccaacacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11686858 |
ccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgttctatcaatgaaatgagaaagccactaagaaagcttccaacacc |
11686759 |
T |
|
| Q |
365 |
aataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacaccaacaatagtaaaaacctcagat |
464 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
11686758 |
aacaatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaagaccaaccatagtaaaaacctctgaa |
11686659 |
T |
|
| Q |
465 |
actccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccatgctcttgtgctaccttcagtc |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| || |||| |
|
|
| T |
11686658 |
actccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcattaggatcatcaacaataccatattcttgtgctatttttagtc |
11686559 |
T |
|
| Q |
565 |
ttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttgaagcattgtgatacctgagggttttccagt |
664 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||| || |
|
|
| T |
11686558 |
ttttcatctcaacaaaggctgcaaatgttaccgtgattatcgatataaaaattccagtgccaattctttgaagcattgtgatgccagagggttttccggt |
11686459 |
T |
|
| Q |
665 |
tatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
||| |||||||| |||||||||| ||||| ||||||| |
|
|
| T |
11686458 |
gatagctcttgctagcggcacgaatatgcggtcatagatag |
11686418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 344 - 705
Target Start/End: Complemental strand, 11785926 - 11785565
Alignment:
| Q |
344 |
acttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacacca |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11785926 |
acttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacacca |
11785827 |
T |
|
| Q |
444 |
acaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccat |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11785826 |
acaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcatttggatcatcaacaagaccat |
11785727 |
T |
|
| Q |
544 |
gctcttgtgctaccttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttgaagcattgt |
643 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11785726 |
gctcttgtgctatctttagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatagaaaaattccagtgccaattctttgaagcattgt |
11785627 |
T |
|
| Q |
644 |
gatacctgagggttttccagttatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11785626 |
gatacctgagggttttccagttatattccttgctagtggcacgaataaacggtcgtagatag |
11785565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 224 - 690
Target Start/End: Complemental strand, 11709258 - 11708792
Alignment:
| Q |
224 |
acttaatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttct |
323 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11709258 |
acttaatccagcaagcaaccaataaaagtaatcaaaatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccactaaaatgttct |
11709159 |
T |
|
| Q |
324 |
atcaatgaaatgagaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcat |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11709158 |
atcaatgaaatgagaaagccacttagaaagcttccaacaccaacaatactcaaatagagtgccagtcccatgcttcttagttcatttgggacttgatcat |
11709059 |
T |
|
| Q |
424 |
agaaaaattcctgaacaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcatt |
523 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11709058 |
agaaaaattcctgaagaccaaccattgtaaaaacctcagaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcatt |
11708959 |
T |
|
| Q |
524 |
aggatcatcaacaagaccatgctcttgtgctaccttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtg |
623 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || | |||||| |||||||||||||||||| ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
11708958 |
aggatcatcaacaagaccatatttttgtgctatttttaatcttttagtctcaacaaaggctgcaaatactaccatgaatattgatataaaaattccagtg |
11708859 |
T |
|
| Q |
624 |
ccaattctttgaagcattgtgatacctgagggttttccagttatattccttgctagtggcacgaata |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
11708858 |
ccaattctttgaagcattgtgatacctgagggctttccagttataactcttgctagtggcacgaata |
11708792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 336 - 705
Target Start/End: Complemental strand, 11801688 - 11801319
Alignment:
| Q |
336 |
agaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcct |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11801688 |
agaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcct |
11801589 |
T |
|
| Q |
436 |
gaacaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaac |
535 |
Q |
| |
|
||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
11801588 |
gaagaccaaccatagtaaaaacctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacaattgcgtttggatcatcaac |
11801489 |
T |
|
| Q |
536 |
aagaccatgctcttgtgctaccttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgccaattctttga |
635 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11801488 |
aagaccatgctcttgtgctatctttagtcttttcatctcaacaaaggctgcaagtactactgtgaatatagatagaaaaattccagtgccaattctttga |
11801389 |
T |
|
| Q |
636 |
agcattgtgatacctgagggttttccagttatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11801388 |
agcattgtaatacctgaggactttccagttataactcttgctagtggcacgaataaacggtcgtagatag |
11801319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 26620833 - 26620759
Alignment:
| Q |
9 |
aacagagaggaactagacaaat----gacaatgataccacatctttacttaatttttaggtatcacgaaattcta |
79 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26620833 |
aacatagaggaactagacaaattaatgacaatgatttaacatctttacttaatttttaagtatcacgaaattcta |
26620759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 26290208 - 26290278
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
26290208 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
26290278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 130 - 705
Target Start/End: Complemental strand, 21145 - 20567
Alignment:
| Q |
130 |
tacaaaaactaatcaatgtctatcat---gagatgatacctttgtgattataaatgtaagattttgcaaagtaaatgaacaaagtaaaccccatgacact |
226 |
Q |
| |
|
|||||||||||||||||| ||||| | | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21145 |
tacaaaaactaatcaatgactatccttgtgtgatgatacctttgtggttataaatgtaagattttgcaaagtaaataaacaaagtaaaccccatgacact |
21046 |
T |
|
| Q |
227 |
taatccagcaagtatccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaagtttcatgtccatctttgccagtaaaatgttctatc |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| || ||||||||||||| |
|
|
| T |
21045 |
taatccagcaagtagccaataaaagtaatcaagatgtgccttattgatattgtcacaaaaccaactatcatgaccatctttggcactaaaatgttctatt |
20946 |
T |
|
| Q |
327 |
aatgaaatgagaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcataga |
426 |
Q |
| |
|
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20945 |
aaagaaattagaaatccactaagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcataga |
20846 |
T |
|
| Q |
427 |
aaaattcctgaacaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattagg |
526 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |
|
|
| T |
20845 |
aaaattcctgaagaccaaccatggtaaaaacctctgaaacaccaaacaaaaagtattgaggaatcaaccaccatatactcattggtacagttgcatttgg |
20746 |
T |
|
| Q |
527 |
atcatcaacaagaccatgctcttgtgctaccttcagtcttttcatctcaacaaaggctgcaaccactactgtgaatatagatggaaaaattccagtgcca |
626 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||| |||||||| ||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
20745 |
atcatcatcaagactatgctcttgtgctatctttagtcttttaatctcaacaaaggctgcaaataccactgtaaatattgatatgaaaattccagtgcca |
20646 |
T |
|
| Q |
627 |
attctttgaagcattgtgatacctgagggttttccagttatattccttgctagtggcacgaataaacggtcgtagatag |
705 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
20645 |
attctttgaagcaatgtgatgcctgagggttttccagtgatacttcttgctagtggcacaaatatacggtcgtagatag |
20567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 330 - 508
Target Start/End: Original strand, 4799 - 4977
Alignment:
| Q |
330 |
gaaatgagaaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaa |
429 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||| |||| |||||| |||||||| | ||| |||| ||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
4799 |
gaaatgagaaagctactcagaaagctcccaaccccaaaaatacttaaatagagggaaagacccacacttcttaattcatccgggacctgatcatagaaaa |
4898 |
T |
|
| Q |
430 |
attcctgaacaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcat |
508 |
Q |
| |
|
|||| || | ||| || || ||||| || ||||||||||||||||| | |||||||||| ||||||||| || ||||| |
|
|
| T |
4899 |
attcttgcagacctaccattgtaaagacatcagatactccaaacaagacatattgaggaatcaaccaccagatgctcat |
4977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 30369952 - 30370022
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30369952 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
30370022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 37251375 - 37251445
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
37251375 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
37251445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 4062020 - 4061950
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4062020 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
4061950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 7333146 - 7333216
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7333146 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
7333216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 8128643 - 8128713
Alignment:
| Q |
10 |
acagagaggaactagacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
||||||| ||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
8128643 |
acagagaacaaccagacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
8128713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 29912438 - 29912365
Alignment:
| Q |
24 |
gacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattctaacatgtgcttggtacaa |
96 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| | |||||||| |||| |
|
|
| T |
29912438 |
gacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattctagctcgtgcttggcacaa |
29912365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 17006716 - 17006773
Alignment:
| Q |
23 |
agacaaatgacaatgataccacatctttacttaat-ttttaggtatcacgaaattcta |
79 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17006716 |
agacaaatgagaatgatatcaaatctttacttaatattttaaatatcacgaaattcta |
17006773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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