View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_5 (Length: 525)
Name: NF20713_low_5
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 14 - 511
Target Start/End: Original strand, 50958001 - 50958511
Alignment:
| Q |
14 |
aggcggtatgcaaacagtaacaaaccaaaataagaaggaccaagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggggtcgtcgccgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50958001 |
aggcggtatgcaaacagtaacaaaccaaaataagaaggaccaagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggggtcatcgccgt |
50958100 |
T |
|
| Q |
114 |
aaccgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatttaatctacataaacatgctatgatcaatagtttatgcaaattta |
213 |
Q |
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| T |
50958101 |
aaccgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatataatctacataaacatgctatgatcactagtttatgcaaattta |
50958200 |
T |
|
| Q |
214 |
agcttgttgttttgttcttattcatactagatcctttgaactcctattgatgtcatagtacaacacattggatggcactttcattactttcttgttttct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50958201 |
agcttgttgttttgttcttattcatactagatcctttaaactcctattgatgtcatagtacaacacattggatggcactttcattactttcttgttttct |
50958300 |
T |
|
| Q |
314 |
aaatcctgcattgtttgttttggaaaagacgtggttggcctgggctcatgataaaattttatacgtaattgttctggaacatagttgaaggtag------ |
407 |
Q |
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| T |
50958301 |
aaatcctgcattgtttgttttggaaaagacgtggttggcctgggctcatgataaaattttatacggaattgttctggaacatagttgaaggtagtaatga |
50958400 |
T |
|
| Q |
408 |
-------taatgattcttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcat |
500 |
Q |
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| T |
50958401 |
tttttaataatgatttttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcat |
50958500 |
T |
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| Q |
501 |
tatgtgcttaa |
511 |
Q |
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||||||||||| |
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| T |
50958501 |
tatgtgcttaa |
50958511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 15856458 - 15856551
Alignment:
| Q |
197 |
tagtttatgcaaatttaagcttgttgttttgttcttattcatactagatcctttgaactcctattgatgtcatagtacaacacattggatggca |
290 |
Q |
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| T |
15856458 |
tagtttatgcaactttaagcttgtcgttttgttcttattcataaaagatcctacaaactcctattaatgtcatagtacaatgcattggatggca |
15856551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 492
Target Start/End: Original strand, 50949637 - 50949747
Alignment:
| Q |
380 |
aattgttctggaacatagttgaaggtagtaatgattcttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatg |
479 |
Q |
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| T |
50949637 |
aattgttcttgaacaaagttgaaggtaattatgattttcaatgctttactat--agaaggatgcagttacacataagttttgtatgaattcattgagatg |
50949734 |
T |
|
| Q |
480 |
gaacataatttat |
492 |
Q |
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|||||| |||||| |
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| T |
50949735 |
gaacattatttat |
50949747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 15856346 - 15856404
Alignment:
| Q |
115 |
accgtagaaggaatggaagggggagggaaaatttccagcaacagtatttttaatttaat |
173 |
Q |
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| T |
15856346 |
accgtagaaggaatgtaagggggaggggaaaactccagcaacagtctttttaatataat |
15856404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 502
Target Start/End: Original strand, 50979991 - 50980073
Alignment:
| Q |
420 |
atgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcatta |
502 |
Q |
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| T |
50979991 |
atgctttagtgtatagaggaatgcaattatgcagaaattttgtattaattcattgagatagaacgttatttatgctcgcatta |
50980073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 485
Target Start/End: Original strand, 15856658 - 15856821
Alignment:
| Q |
324 |
ttgtttgttttggaaaagacgtggttggcctgggctcatgataaaattttatacgtaattgttctggaacatagttgaaggtagtaatgattcttaatgc |
423 |
Q |
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|||||| |||||||||||| ||| ||| | || | ||||||||| |||||||| | |||||||| ||| | |||||||||||| || ||| | || | |
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| T |
15856658 |
ttgtttattttggaaaagatgtgattgccttgagttcatgataatattttatatggaattgttcaggacaaaagttgaaggtagatataattttcaacga |
15856757 |
T |
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| Q |
424 |
tttactgtgtagaa--gaatgcaattatgcataaattttgtgtgaatttattgagatggaacat |
485 |
Q |
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| T |
15856758 |
tttaatatattgaaaagaatgcaatcatgcagaaattttgtatgagttcattgagatggaacat |
15856821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 33632271 - 33632377
Alignment:
| Q |
405 |
tagtaatgattcttaatgctttactgtgtagaagaatgcaattatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatg |
504 |
Q |
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|||| |||||| | |||||||||| || ||||||||||||||| |||| ||||||||| |||||| |||||||| ||| || | |||||| |||||||| |
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| T |
33632271 |
tagttatgattttcaatgctttacagtatagaagaatgcaattttgcagaaattttgtatgaattcattgagattgaatattacgtatgttggcattatg |
33632370 |
T |
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| Q |
505 |
tgcttaa |
511 |
Q |
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||||||| |
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| T |
33632371 |
tgcttaa |
33632377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 433 - 511
Target Start/End: Original strand, 8156636 - 8156715
Alignment:
| Q |
433 |
tagaagaatgca-attatgcataaattttgtgtgaatttattgagatggaacataatttatgttagcattatgtgcttaa |
511 |
Q |
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| T |
8156636 |
tagaagattgcatattatgcagacattttgtatgaattcattgagatggaacattatttatgttggcattatgtgcttaa |
8156715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 8155334 - 8155381
Alignment:
| Q |
55 |
aagggatatttacaaagtgtgatcaatttgggaaggctgcaagagggg |
102 |
Q |
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| T |
8155334 |
aagggatatttacaaagagtgatcgatttgtgaaggctgcaagagggg |
8155381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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