View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20713_low_6 (Length: 422)

Name: NF20713_low_6
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20713_low_6
NF20713_low_6
[»] chr7 (20 HSPs)
chr7 (301-405)||(5175612-5175716)
chr7 (185-277)||(5175027-5175115)
chr7 (16-109)||(21589746-21589839)
chr7 (16-107)||(28804882-28804973)
chr7 (13-98)||(18312736-18312821)
chr7 (19-98)||(20556675-20556754)
chr7 (16-106)||(22740057-22740147)
chr7 (16-98)||(28805141-28805223)
chr7 (16-98)||(31303362-31303444)
chr7 (22-115)||(21548581-21548673)
chr7 (18-106)||(4290951-4291039)
chr7 (19-105)||(22033186-22033271)
chr7 (16-106)||(31303575-31303665)
chr7 (13-106)||(32964871-32964964)
chr7 (24-88)||(5174814-5174878)
chr7 (16-88)||(22032980-22033051)
chr7 (23-109)||(18312956-18313042)
chr7 (16-105)||(5083690-5083779)
chr7 (16-69)||(15958432-15958485)
chr7 (16-109)||(20556892-20556985)
[»] chr4 (19 HSPs)
chr4 (19-105)||(14351188-14351274)
chr4 (16-109)||(1966728-1966820)
chr4 (16-98)||(16583505-16583587)
chr4 (16-102)||(17633459-17633545)
chr4 (16-108)||(17633236-17633328)
chr4 (16-72)||(24669296-24669352)
chr4 (16-106)||(19596906-19596996)
chr4 (16-108)||(42908690-42908782)
chr4 (16-97)||(55666942-55667023)
chr4 (21-98)||(25007625-25007701)
chr4 (16-88)||(9810886-9810958)
chr4 (16-102)||(9808979-9809065)
chr4 (16-102)||(9810665-9810751)
chr4 (16-97)||(19746940-19747021)
chr4 (16-97)||(19792785-19792866)
chr4 (19-71)||(8740912-8740964)
chr4 (16-88)||(9809199-9809271)
chr4 (34-74)||(14350997-14351037)
chr4 (16-96)||(19596691-19596771)
[»] chr2 (10 HSPs)
chr2 (16-110)||(1400666-1400760)
chr2 (16-109)||(28527217-28527309)
chr2 (16-108)||(30905945-30906037)
chr2 (16-94)||(41212429-41212507)
chr2 (18-98)||(30906171-30906251)
chr2 (19-93)||(45305881-45305955)
chr2 (16-108)||(34175231-34175323)
chr2 (16-96)||(43900439-43900519)
chr2 (16-93)||(33667252-33667329)
chr2 (16-99)||(33667438-33667521)
[»] chr6 (21 HSPs)
chr6 (13-102)||(24386331-24386420)
chr6 (16-109)||(2835085-2835178)
chr6 (16-98)||(22608270-22608352)
chr6 (13-102)||(20084581-20084670)
chr6 (16-109)||(30056019-30056112)
chr6 (17-72)||(10304631-10304686)
chr6 (16-105)||(11108067-11108156)
chr6 (10-106)||(138612-138707)
chr6 (10-106)||(146633-146728)
chr6 (19-102)||(2430507-2430591)
chr6 (17-103)||(7915717-7915803)
chr6 (16-109)||(9068528-9068624)
chr6 (18-108)||(18980401-18980491)
chr6 (16-97)||(23595264-23595345)
chr6 (21-109)||(3620653-3620741)
chr6 (19-95)||(23595066-23595142)
chr6 (44-105)||(9474536-9474598)
chr6 (16-93)||(7706773-7706850)
chr6 (16-97)||(11108194-11108275)
chr6 (16-96)||(3222343-3222422)
chr6 (25-89)||(3620886-3620950)
[»] chr3 (19 HSPs)
chr3 (16-97)||(3823561-3823642)
chr3 (18-109)||(3823776-3823867)
chr3 (16-98)||(3785871-3785953)
chr3 (16-105)||(19280320-19280409)
chr3 (16-107)||(5341999-5342090)
chr3 (18-109)||(3786086-3786175)
chr3 (19-109)||(11510062-11510151)
chr3 (13-106)||(42637855-42637946)
chr3 (19-89)||(44080174-44080244)
chr3 (33-98)||(9710853-9710918)
chr3 (35-98)||(31545435-31545498)
chr3 (16-106)||(31545739-31545829)
chr3 (16-72)||(11501243-11501299)
chr3 (16-98)||(19280109-19280189)
chr3 (20-106)||(11501397-11501483)
chr3 (35-96)||(11509814-11509875)
chr3 (16-109)||(26308533-26308626)
chr3 (16-105)||(27335291-27335380)
chr3 (16-72)||(23163263-23163319)
[»] chr1 (14 HSPs)
chr1 (16-104)||(34490311-34490399)
chr1 (15-109)||(13351007-13351101)
chr1 (33-91)||(29677209-29677267)
chr1 (13-102)||(5855012-5855100)
chr1 (16-109)||(29676979-29677072)
chr1 (22-101)||(13350889-13350968)
chr1 (19-109)||(5831658-5831748)
chr1 (16-109)||(5855227-5855320)
chr1 (45-106)||(34941701-34941762)
chr1 (21-105)||(34490091-34490175)
chr1 (19-102)||(34364138-34364221)
chr1 (16-70)||(25238599-25238653)
chr1 (43-105)||(38952057-38952119)
chr1 (33-96)||(517547-517613)
[»] chr8 (14 HSPs)
chr8 (324-403)||(5179312-5179391)
chr8 (18-98)||(24576180-24576260)
chr8 (16-98)||(31596704-31596786)
chr8 (19-106)||(38606724-38606811)
chr8 (16-72)||(5322080-5322136)
chr8 (16-105)||(5573902-5573992)
chr8 (28-87)||(15233138-15233197)
chr8 (16-98)||(1251594-1251676)
chr8 (16-98)||(31273680-31273762)
chr8 (16-98)||(38606946-38607028)
chr8 (16-72)||(15233340-15233396)
chr8 (16-112)||(26493227-26493323)
chr8 (16-94)||(33286130-33286208)
chr8 (16-56)||(6809919-6809959)
[»] chr5 (16 HSPs)
chr5 (16-98)||(35922617-35922699)
chr5 (16-106)||(36169302-36169392)
chr5 (16-102)||(43262818-43262904)
chr5 (16-106)||(15221687-15221777)
chr5 (28-105)||(33958878-33958954)
chr5 (24-104)||(42034887-42034967)
chr5 (16-71)||(31189512-31189567)
chr5 (16-72)||(19621590-19621646)
chr5 (28-102)||(43461830-43461904)
chr5 (16-98)||(13312721-13312799)
chr5 (33-101)||(16095519-16095587)
chr5 (19-106)||(35922858-35922944)
chr5 (33-87)||(7156000-7156054)
chr5 (18-72)||(15221571-15221625)
chr5 (16-66)||(36169451-36169501)
chr5 (59-109)||(43262621-43262671)
[»] scaffold1126 (2 HSPs)
scaffold1126 (17-98)||(328-409)
scaffold1126 (16-106)||(104-195)
[»] scaffold0251 (1 HSPs)
scaffold0251 (28-102)||(10745-10819)
[»] scaffold0126 (1 HSPs)
scaffold0126 (24-100)||(21420-21496)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 405
Target Start/End: Original strand, 5175612 - 5175716
Alignment:
Q  301 aaggaagcctcatccttactcatatctctcttgccaaggaaggaccctctgccaatttctaactcaccgtaacattttcgaacaacacccatttctagct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5175612 aaggaagcctcatccttactcatatctctcttgccaaggaaggaccctctgccaatttctaactcaccgtaacattttcgaacaacacccatttctagct 5175711  T
Q  401 tctac 405  Q
    |||||    
T  5175712 tctac 5175716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 5175027 - 5175115
Alignment:
Q  185 acttggtaaaaccttgtctaggctgaaaatgtgaataagcttgttggagtaaggaggtgaccgccgccatcaaggaatcgcat-atccttgaca 277  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||| ||||||||||    
T  5175027 acttggtaaaac-ttgtctaggctgaaaatgtgaataag-ttgttggagtaaggaggtga---ccgccatcaaggaatcgcataatccttgaca 5175115  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 21589746 - 21589839
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||| |||||||||  |||||||||||||| ||||||||| |||  |||| ||||||||||||||| || |||| |||||||    
T  21589746 atgtggtcacacagaccatatatttggataactgaaattttttagagtggtataaacggatgtacacattaagggtgtttagctattattgctc 21589839  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 28804973 - 28804882
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgc 107  Q
    ||||||||||| |||| ||||||||| ||||||||||||||  ||| |||||||||  | || ||| |||||||||||||||||||||||||    
T  28804973 atgtggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatcattgc 28804882  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 18312821 - 18312736
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||||||| |||| ||||||||| |||| ||||||||| ||||||||||||||| | |  |||| |||||||||||||||    
T  18312821 aatatgtggtcacagagaccatatatttgattaattgaaattttcgagagtggtacaaaggggtatacacgttaagggtgtctacc 18312736  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 20556754 - 20556675
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||||   ||||||||||  ||||||||||||||||||||    
T  20556754 tggtcacaccgaccatatatttggttaactgaaattttcgagagtaacacaaagagatatacacattaagggtgtctacc 20556675  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 22740147 - 22740057
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    |||||||||||||||| ||||||||| |||||| |||| ||| |||||| |||| |||| || |||||||||| ||||| | |||||||||    
T  22740147 atgtggtcacacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatctatcattg 22740057  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 28805141 - 28805223
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||||||| || ||||||||| |||||| |||||||| |||||| ||||||| | |  ||||||||||||||||||||    
T  28805141 atgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctacc 28805223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 31303444 - 31303362
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||| ||||| || |||||| || |||||||||||| |||||| ||||||  |||| ||||||||||||||||||||    
T  31303444 atgtggtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtctacc 31303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 21548581 - 21548673
Alignment:
Q  22 tcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctcctttta 115  Q
    |||||||||| ||||||||  ||||||||||||||| ||| |||||||| || ||  ||||||||||| ||||||| ||||||||||| |||||    
T  21548581 tcacacagaccatatatttagttaactgaaattttttagaatggtacaagga-atatacacattaaggatgtctacttatcattgctcttttta 21548673  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 4290951 - 4291039
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||| |||||  || |||||| ||||||||||||||| | ||| ||||||||||||  ||||||||| ||| ||||||||||||||    
T  4290951 gtggtcatacagatcatttatttggttaactgaaatttttcaaagtagtacaaagagattgacacattaaaggtatctacctatcattg 4291039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 22033186 - 22033271
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||||| ||||||||| |||||| |||||||| ||| |||||||||| |||| |||||||||| || || ||| ||||||    
T  22033186 tggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaag-gatgtacacattaagagtctcaacccatcatt 22033271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 31303575 - 31303665
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||||| || ||||||||  |||||||||||||||  |||||||| |||  |||| | ||||||| |||||||||| |||||||    
T  31303575 atgtggtcacacataccatatattttgttaactgaaatttttttgagtggtataaaaggatgtagacattaaaggtgtctaccaatcattg 31303665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 32964871 - 32964964
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||||||||||| |||||| |  |||||| |||||||| |||||| ||||||  | || | ||||||| ||||||||| ||||||||    
T  32964871 aatatgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaaggtgtctacatatcattg 32964964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 5174878 - 5174814
Alignment:
Q  24 acacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaag 88  Q
    ||||| || |||||| || |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  5174878 acacaaaccatatatatgattaactgaaattttcgagcgtggtacaaagagatgtacacattaag 5174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 22033051 - 22032980
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaag 88  Q
    ||||||||||||| || ||||||||| |||||| |||||||  |||||||||||||| |||| ||||||||||    
T  22033051 atgtggtcacacataccatatatttggttaacttaaattttaaagagtggtacaaag-gatgtacacattaag 22032980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 18312956 - 18313042
Alignment:
Q  23 cacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||| || ||||||||| ||| ||||||||||| ||||||||||||||   ||  ||||||||| |||| ||| |||||||||||    
T  18312956 cacacaaaccatatatttggttagctgaaatttttcagagtggtacaaaggagtgtgcacattaagagtgtttacgtatcattgctc 18313042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 5083779 - 5083690
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||| |||| ||||||||| ||||||||||||||| | |||| || |||| | |  | | ||||||| |||||||||||||||    
T  5083779 atgtggtcacaaagaccatatatttgattaactgaaatttttcaaagtgatataaaggggtatatagattaaggatgtctacctatcatt 5083690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 15958432 - 15958485
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtaca 69  Q
    |||||||||||||||| ||||||||  ||||||||||||||  |||||||||||    
T  15958432 atgtggtcacacagaccatatatttagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 20556892 - 20556985
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||||||| |||||| ||||||||  |||||||||| |||| | |||| |||||||   ||  || ||||||| | |||||||||||||||||    
T  20556892 atgtggtcaaacagactatatatttagttaactgaaaattttcaaagtgatacaaaggagtgtgcatattaaggatatctacctatcattgctc 20556985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 14351188 - 14351274
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    |||||||||| || ||||||||| |||||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  14351188 tggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacctatcatt 14351274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 1966820 - 1966728
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||  | || | ||| |||||||||||||||||||||||||    
T  1966820 atgtggtcacacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgtatacagtaagggtgtctacctatcattgctc 1966728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 16583587 - 16583505
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||||   || ||||||||| |||||||||||||| ||||||||||||||| |||| || |||||||||||||||||    
T  16583587 atgtggtcacatcaaccatatatttggttaactgaaattttcgagagtggtacaaagggatgtacgcattaagggtgtctacc 16583505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 17633459 - 17633545
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||| | || ||| ||||||||| || |||||||    
T  17633459 atgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaagggtatcaacctatc 17633545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 17633328 - 17633236
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaa-gagatgcacacattaagggtgtctacctatcattgct 108  Q
    |||||||||||||||| ||||||||| |||||| ||||||||  |||||||||||| ||| || ||||||||| |||||| ||||||| |||||    
T  17633328 atgtggtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgag-tgtacacattaaaggtgtcaacctatccttgct 17633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 24669296 - 24669352
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    |||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||    
T  24669296 atgtggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaag 24669352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 19596906 - 19596996
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||||  || ||||||||| ||||||||||||||  | |  ||||||||  |||| |||||||||||| |||||||||||||||    
T  19596906 atgtggtcacacgtaccatatatttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggcgtctacctatcattg 19596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 42908690 - 42908782
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaa-gagatgcacacattaagggtgtctacctatcattgct 108  Q
    ||||||||||||| || ||||||||| |||||| |||||||| ||||||||||||| ||| |||||| ||||| | |||  |||||||||||||    
T  42908690 atgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaatgag-tgcacatattaaagatgttaacctatcattgct 42908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 55666942 - 55667023
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    |||||||||||||||| ||||||||  |||||||||||||| || ||||||||||||   || ||| |||||||||| ||||    
T  55666942 atgtggtcacacagaccatatatttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaagggtggctac 55667023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 25007625 - 25007701
Alignment:
Q  21 gtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||| |||| ||||||||| |||||||||||||| |||| |||||||||| | || | |||||||| |||||||||    
T  25007625 gtcacatagaccatatatttggttaactgaaattttcgagaatggtacaaag-ggtgtatacattaagagtgtctacc 25007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 9810886 - 9810958
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaag 88  Q
    |||||||||||||||| ||||||||| |||||| ||| |||  ||||||||||||| || |  ||||||||||    
T  9810886 atgtggtcacacagaccatatatttggttaacttaaaatttctagagtggtacaaataggtttacacattaag 9810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 9809065 - 9808979
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||||||||| ||||| ||||||||  ||||||||| ||||| | || ||||||||  | || ||| |||||||||||| |||||||    
T  9809065 atgtggtcacgcagaccatatatttagttaactgaattttttcatagcggtacaaaagggtgtacatattaagggtgtcaacctatc 9808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 9810751 - 9810665
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    ||||||| || || || ||||||||  ||||||||||||||| | |||||||||||  | || ||| |||||||||||| |||||||    
T  9810751 atgtggtaacgcaaaccatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtcaacctatc 9810665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 19746940 - 19747021
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    ||||||||| |||||| || |||||  |||||||||||||| |||| || ||||||| | || |||||||||  ||||||||    
T  19746940 atgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 19792866 - 19792785
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    ||||||||| |||||| || |||||  |||||||||||||| |||| || ||||||| | || |||||||||  ||||||||    
T  19792866 atgtggtcaaacagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaaaagtgtctac 19792785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8740912 - 8740964
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaa 71  Q
    ||||||||||||  ||| ||||| |||||||||| ||||||||||| ||||||    
T  8740912 tggtcacacagatcatacatttgattaactgaaaattttgagagtgatacaaa 8740964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 9809199 - 9809271
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaag 88  Q
    |||||||||||||||| ||||| ||| |||||| ||| |||  ||||||||||||| || |  ||||||||||    
T  9809199 atgtggtcacacagaccatatacttggttaacttaaaatttctagagtggtacaaataggtttacacattaag 9809271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 14351037 - 14350997
Alignment:
Q  34 tatatttgtttaactgaaatttttgagagtggtacaaagag 74  Q
    |||||||| |||||||||||||| ||||||||| |||||||    
T  14351037 tatatttggttaactgaaattttcgagagtggtgcaaagag 14350997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 19596771 - 19596691
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtcta 96  Q
    |||||||||| | ||| ||||||||| | ||| || |||||| |||||||||||||| | || ||||||||| | ||||||    
T  19596771 atgtggtcacgctgaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagatgtcta 19596691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 1400760 - 1400666
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctcc 110  Q
    ||||||||||||| || ||||||||| ||||||||||||||| ||| |||||||||  | || ||||||||||||||||||||||| ||||||||    
T  1400760 atgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtctacctattattgctcc 1400666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 28527309 - 28527217
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||| ||||||||| ||| ||||||||||| | |||||||||||| | || ||| |||||||||||||||||||||||||||    
T  28527309 atgtggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtctacctatcattgctc 28527217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 30906037 - 30905945
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgct 108  Q
    ||||||||||||||||||||||| || |||||| ||| |||| ||| || ||||||| |||| |||||||||| |||||||||||||||||||    
T  30906037 atgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtctacctatcattgct 30905945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 41212429 - 41212507
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtc 94  Q
    |||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||| | |  ||| ||||||||||||    
T  41212429 atgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 30906171 - 30906251
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||  | || ||||||||| ||||| ||||    
T  30906171 gtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaaaggtgtgtacc 30906251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 45305955 - 45305881
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgt 93  Q
    |||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||   || ||| |||||||||||    
T  45305955 tggtcatacagactatatatttgattaactgaaattttttagagtggtacaaaggagtgtacatattaagggtgt 45305881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 34175231 - 34175323
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgct 108  Q
    |||| |||||||| |  ||||||||| |||||| |||||||| ||| |||||||||  | || ||||||||| |||||| |||||||||||||    
T  34175231 atgttgtcacacaaattatatatttgattaacttaaattttttagaatggtacaaatgggtgtacacattaatggtgtcaacctatcattgct 34175323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 43900519 - 43900439
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtcta 96  Q
    ||||| |||||||||| ||||||||  ||| |||||||||| ||||||||||||||  |||  |||||||||  |||||||    
T  43900519 atgtgatcacacagaccatatatttagttacctgaaattttcgagagtggtacaaaatgatctacacattaaaagtgtcta 43900439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 33667329 - 33667252
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgt 93  Q
    ||||||||| ||| || ||||||||| |||| |||| ||||| ||||||||  |||| |||| | |||||||||||||    
T  33667329 atgtggtcatacaaaccatatatttggttaattgaatttttttagagtggtgtaaagggatgtagacattaagggtgt 33667252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33667438 - 33667521
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtac-aaagagatgcacacattaagggtgtctacct 99  Q
    ||||| ||| ||| || ||||||||| |||||| |||||||| |||||||||| |||||| || ||| |||||||||||| ||||    
T  33667438 atgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaagag-tgtacatattaagggtgtcaacct 33667521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 24386331 - 24386420
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    ||||||||||||||||||| ||||||||| |||||| |||||||| || |||||| |||| |||| |||||||||||||||| |||||||    
T  24386331 aatatgtggtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtcaacctatc 24386420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 2835085 - 2835178
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||   |||||||| |||||| |||||||| |||||||||||||  |||  ||||||||||| |||||||||||||||||||    
T  2835085 atgtggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggctgtctacctatcattgctc 2835178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 22608352 - 22608270
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||| | || ||||||||||| | ||||||    
T  22608352 atgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaaggatatctacc 22608270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 20084670 - 20084581
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||||||||||||||| || ||||||||| |||||| |||||||| ||  ||||| |||| |||| |||||||||||||||| |||||||    
T  20084670 aatatgtggtcacacataccatatatttggttaacttaaatttttcagcatggtataaagggatgtacacattaagggtgtcaacctatc 20084581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 30056112 - 30056019
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||||||||| |||| ||||||||| ||||||||||||||| ||||| |||||||| |  | | ||||||| ||||||||||||| |||||||    
T  30056112 atgtggtcacatagaccatatatttggttaactgaaattttttagagttgtacaaaggggagtatacattaaaggtgtctacctattattgctc 30056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 10304686 - 10304631
Alignment:
Q  17 tgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  10304686 tgtggtcacacagaccatatatttggttaactgaaattttttagagtggtacaaag 10304631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 11108156 - 11108067
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    |||||||||||||||| ||||||||| |||| |||||||||| ||||| ||||||    ||| |||||||||| ||||||||||| ||||    
T  11108156 atgtggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaagtgaatgtacacattaagagtgtctacctaccatt 11108067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 138707 - 138612
Alignment:
Q  10 aagaatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||| |||||| ||||||||| ||||||||| |||||| || ||||| ||||||||| ||||| |||  || ||||||||| ||||||||||||||    
T  138707 aagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaaga-atgtgcatattaagggtatctacctatcattg 138612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 146728 - 146633
Alignment:
Q  10 aagaatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||| |||||| ||||||||| ||||||||| |||||| || ||||| ||||||||| ||||| |||  || ||||||||| ||||||||||||||    
T  146728 aagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggtataaaga-atgtgcatattaagggtatctacctatcattg 146633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2430591 - 2430507
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttg-agagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    ||||||||||||  ||||||||  |||||||||||||||  ||| ||||||||||  ||| ||||||||||||||||||||||||    
T  2430591 tggtcacacagatcatatatttagttaactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacctatc 2430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 7915717 - 7915803
Alignment:
Q  17 tgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaaga-gatgcacacattaagggtgtctacctatca 103  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||| | || ||||||||||  |||||| ||||||    
T  7915717 tgtggtcacacagacgatatatttgattaactgaaatttttcagagtggta-aaagagggtgtacacattaagaatgtctatctatca 7915803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9068528 - 9068624
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacat---taagggtgtctacctatcattgctc 109  Q
    ||||||||||||| || ||||||||| |||||| |||||||| |||||||||||||  | || ||||||   ||||| |||||||| ||||||||||    
T  9068528 atgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaataaggatgtctaccgatcattgctc 9068624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 18980401 - 18980491
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgct 108  Q
    ||||||||| |||| ||||||||  |||||| | |||||  ||||||||||||| || ||  ||||||||| ||||| |||||||||||||    
T  18980401 gtggtcacatagaccatatatttagttaacttagattttgcagagtggtacaaaaaggtgtgcacattaagagtgtcaacctatcattgct 18980491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 23595264 - 23595345
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    |||||||||||||||| ||||||||| |||| |||||||||| |||||  ||||||  | || ||| ||||||| |||||||    
T  23595264 atgtggtcacacagactatatatttggttaattgaaattttttagagtaatacaaaagggtgtacatattaaggttgtctac 23595345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 3620741 - 3620653
Alignment:
Q  21 gtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||| || |||||||||||||||| |||   || ||||||||| |||  |||| ||||||||||  ||||||||||||| |||||    
T  3620741 gtcacacaaaccatatatttgtttaactaaaaaaattcagagtggtataaatggatgtacacattaagaatgtctacctatcactgctc 3620653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 23595142 - 23595066
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtct 95  Q
    ||||||||||||| ||||||||  |||||| ||||||| ||||||| ||||||  | || ||||||||| |||||||    
T  23595142 tggtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaaaggtgtct 23595066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 9474598 - 9474536
Alignment:
Q  44 taactgaaatttttga-gagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    |||||||||||||| | ||||||||||||  |||| | |||||||| ||||||||||||||||    
T  9474598 taactgaaatttttcaagagtggtacaaaaggatgtatacattaagagtgtctacctatcatt 9474536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 7706850 - 7706773
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgt 93  Q
    ||||||||||||| || |||||||   |||||| |||||||| ||| |||||||||  |||| ||||||||| |||||    
T  7706850 atgtggtcacacaaaccatatattatattaactaaaatttttcagaatggtacaaaaggatgtacacattaaaggtgt 7706773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 11108194 - 11108275
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    ||||||||||||| |  ||||||||| |||| |||| ||||| ||| |  |||||| ||||  |||||||||||||||||||    
T  11108194 atgtggtcacacaaatcatatatttggttaattgaatttttttagaataatacaaaaagatatacacattaagggtgtctac 11108275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3222422 - 3222343
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtcta 96  Q
    ||||||||||| | || ||||||||| |||  |||||||||| |||||  ||||||| | || ||||||||||||||||||    
T  3222422 atgtggtcacagacaccatatatttggttatttgaaatttttaagagtaatacaaag-ggtgtacacattaagggtgtcta 3222343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3620886 - 3620950
Alignment:
Q  25 cacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagg 89  Q
    ||||||| | ||||||| |||||||||||||| || | | |||||||| |||| |||||||||||    
T  3620886 cacagaccacatatttgattaactgaaattttcgaaaatagtacaaagcgatgtacacattaagg 3620950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 3823642 - 3823561
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctac 97  Q
    |||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||| | || |||||||||||||||||||    
T  3823642 atgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctac 3823561  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 3823776 - 3823867
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||||||||||| ||||||| |||||||  |||| |||||||  | || ||| |||||||||||||||||||||||||||    
T  3823776 gtggtcacacagacaatatatttggttaactggaatttttctgagtagtacaaacgggtgaacatattaagggtgtctacctatcattgctc 3823867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3785953 - 3785871
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||||||||| ||| | ||| |||||||||||||| ||||||||||||||| | || ||||||||||||||||||||    
T  3785953 atgtggtcacacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctacc 3785871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 19280320 - 19280409
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    |||| ||||||||||| ||||||||| |||||| ||| |||| |||||||||||||  | || |||||||||||||||||||||||||||    
T  19280320 atgttgtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacctatcatt 19280409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 5341999 - 5342090
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgc 107  Q
    |||||||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| | || || ||||| || |||||||||||||||||    
T  5341999 atgtggtcacacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacctatcattgc 5342090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 3786086 - 3786175
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||||||||||||| ||||||| |||||||  ||||||||  ||  | || ||| |||||||||||||||||||||||||||    
T  3786086 gtggtcacacagacaatatatttggttaactggaatttttctgagtggta--aacgggtgaacatattaagggtgtctacctatcattgctc 3786175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 11510062 - 11510151
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||| |  |||||||| |||||||||||||||| ||||  |||||||| |||  ||||||||||| |||||||||||||||||||    
T  11510062 tggtcacacatattatatatttatttaactgaaatttttcagaggtgtacaaag-gatatacacattaaggatgtctacctatcattgctc 11510151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 42637946 - 42637855
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    |||||| ||||||||| | |||||||||| |||| |||||||||| ||  |||||||||| ||||  |||||||||||||||||||||| ||||    
T  42637946 aatatgcggtcacacaaataatatatttggttaattgaaatttttcag--tggtacaaagggatgtgcacattaagggtgtctacctattattg 42637855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 44080244 - 44080174
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagg 89  Q
    ||||||||||||  ||||||||| |||||||||||| || ||||||||||||||| ||| |||||||||||    
T  44080244 tggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaagatatgtacacattaagg 44080174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 9710853 - 9710918
Alignment:
Q  33 atatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||| ||||||||||||||| |||||||||||||| | || ||| ||||||||| ||||||    
T  9710853 atatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaagggtttctacc 9710918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 31545498 - 31545435
Alignment:
Q  35 atatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||| |||||||||||||| |||||| |||||||| |||  ||||||||| ||||||||||    
T  31545498 atatttgattaactgaaattttcgagagtagtacaaagggatatacacattaaaggtgtctacc 31545435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 31545739 - 31545829
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||| |||| ||||||| | ||| ||||||||||| |||||| |||||| ||||| ||| |||||   ||||||||||| ||||    
T  31545739 atgtggtcacatagaccatatattaggttacctgaaatttttcagagtgatacaaaaagatgtacatattaaaattgtctacctataattg 31545829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11501299 - 11501243
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||||||||||||    
T  11501299 atgtggtcacacagaccatatatttggttatttgaaaattttcagagtggtacaaag 11501243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 19280189 - 19280109
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||| ||||| ||||||||| |||||| |||| ||| ||  |||||||||| | || |||| |||||||||||||||    
T  19280189 atgtggtcactcagaccatatatttggttaactaaaatattttag--tggtacaaaggggtgtacactttaagggtgtctacc 19280109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 11501397 - 11501483
Alignment:
Q  20 ggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    |||||||||||  ||||||||| |||||| |||||||  | ||||||| ||||   || |||||||||| ||||| |||||||||||    
T  11501397 ggtcacacagatcatatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatcattg 11501483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 11509875 - 11509814
Alignment:
Q  35 atatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtcta 96  Q
    ||||||| |||  |||||||||| |||||||||||||| | || |||||||||| |||||||    
T  11509875 atatttggttatttgaaatttttaagagtggtacaaaggggtgtacacattaagtgtgtcta 11509814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 26308626 - 26308533
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||||||||||| || ||||||||  |||||||| |||||| | |||| |||||| |  || ||| ||||| ||||||||  |||||||||||    
T  26308626 atgtggtcacacaaaccatatatttagttaactgatatttttcaaagtgatacaaaaaagtgtacatattaaaggtgtctatgtatcattgctc 26308533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 27335380 - 27335291
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||||| || ||||  ||| |||||| ||| |||| ||| |||||||||| | || ||||||||| | ||| |||||||||||    
T  27335380 atgtggtcacacataccatattattggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaagatgtttacctatcatt 27335291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 23163319 - 23163263
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    |||| |||||| |||| ||||||| | |||||||| ||||| |||||||||||||||    
T  23163319 atgtagtcacatagaccatatattagattaactgatattttcgagagtggtacaaag 23163263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 34490311 - 34490399
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcat 104  Q
    |||||||||||||||| ||||||||  | ||||||||||||| |||||||||||||| | || |||||||||| |||||||||||||||    
T  34490311 atgtggtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtctacctatcat 34490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 13351007 - 13351101
Alignment:
Q  15 tatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||| |||| ||||||||| |||| | |||||||| |||||||||||||| | || ||||||||| | |||||| ||||||||||||    
T  13351007 tatgtggtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaagatgtctagctatcattgctc 13351101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 29677209 - 29677267
Alignment:
Q  33 atatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggt 91  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  29677209 atatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaagggt 29677267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 5855100 - 5855012
Alignment:
Q  13 aatatgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||| | ||| |||||||| |||| | |||||||| |||||||||||||    
T  5855100 aatatgtggtcacacagaccatatatttggttagctgaaatttttca-agtagtacaaagggatgtaaacattaagcgtgtctacctatc 5855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 29677072 - 29676979
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    |||||||||||||| | ||||||||| |||||| |||||||| | |||| ||||||| || | ||||||||| |||||||| ||||||||||||    
T  29677072 atgtggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaaggtgtctaactatcattgctc 29676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 13350968 - 13350889
Alignment:
Q  22 tcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctat 101  Q
    ||||||| || ||||||||| |||||||||||||| ||||||||||||||  | || ||||||||||| |||||||||||    
T  13350968 tcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtctacctat 13350889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 5831658 - 5831748
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||||||||||| ||||||||| |||| |||||||||| |||||| ||||||| | || |||| |||| ||||||| ||| |||||||||    
T  5831658 tggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaaaggtgtctccctgtcattgctc 5831748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 5855227 - 5855320
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtac-aaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||||||||||| || ||||||||| |||||| |||||||| |||||||||| |||||| || ||| ||||  |||||||||||||||||||||    
T  5855227 atgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagag-tgtacatattagtggtgtctacctatcattgctc 5855320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 34941762 - 34941701
Alignment:
Q  45 aactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||| ||||| ||||||||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtcttcctatcattg 34941701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 34490175 - 34490091
Alignment:
Q  21 gtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||| ||||||||  ||||||||||||||  | |||||||| || ||||  |||||||||||||||||||| ||||||    
T  34490175 gtcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtctaccaatcatt 34490091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 34364221 - 34364138
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    ||||||||||||| ||||||||  |||||| |||||||  ||||||||||||| |||||  || ||||| |||||| |||||||    
T  34364221 tggtcacacagaccatatatttagttaacttaaattttccagagtggtacaaatagatgtgcatattaatggtgtcaacctatc 34364138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 25238599 - 25238653
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaa 70  Q
    ||||||||||| | || ||||||||| ||||||||||||||| ||||||||||||    
T  25238599 atgtggtcacagaaaccatatatttgattaactgaaatttttcagagtggtacaa 25238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 38952057 - 38952119
Alignment:
Q  43 ttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||||||| |||||| ||||||||| || | || |||||| |||||| ||||||||    
T  38952057 ttaactgaaatttttcagagtgatacaaagaggtgtatactttaaggttgtctatctatcatt 38952119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 517547 - 517613
Alignment:
Q  33 atatatttgtttaactgaaatttttgagagtggtacaaaga---gatgcacacattaagggtgtcta 96  Q
    ||||||||| |||||| ||||||||||||||| |||||| |   |||| ||||||||||| ||||||    
T  517547 atatatttggttaacttaaatttttgagagtgatacaaataaatgatgtacacattaaggatgtcta 517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 5179312 - 5179391
Alignment:
Q  324 atctctcttgccaaggaaggaccctctgccaatttctaactcaccgtaacattttcgaacaacacccatttctagcttct 403  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |||||||    
T  5179312 atctctcctgccaaggaaggaccctctgccaatttctgactcaccataacattttcggacatcactcatttccagcttct 5179391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24576180 - 24576260
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||| | || |||||||| |||||||||||    
T  24576180 gtggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacattacgggtgtctacc 24576260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 31596786 - 31596704
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||||||| || ||||||||| ||||||| ||||||| | |||||||||||||| || ||| |||||| |||||||||    
T  31596786 atgtggtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctacc 31596704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 38606811 - 38606724
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    |||||||||| || ||||||||  ||||||||||||||| |||||||||||||| | |  | | ||||||| ||||||||||||||||    
T  38606811 tggtcacacataccatatatttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatgtctacctatcattg 38606724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5322080 - 5322136
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||||||| |||||||    
T  5322080 atgtgatcacacagaccatatatttggttaattgaaatttttgagagtgatacaaag 5322136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 5573902 - 5573992
Alignment:
Q  16 atgtggtcacacagaca-atatatttgtttaactgaaatttttgagagtggtac-aaagagatgcacacattaagggtgtctacctatcatt 105  Q
    ||||||||||| ||||| ||||||||  ||||||||||| ||| |||||||||| |||||| || ||||||||| || ||||||||||||||    
T  5573902 atgtggtcacaaagacatatatatttagttaactgaaatcttttagagtggtacaaaagag-tgtacacattaaaggagtctacctatcatt 5573992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 15233197 - 15233138
Alignment:
Q  28 agacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaa 87  Q
    |||| ||||||||| ||||||||||||||| ||| |||||| |||||||| |||||||||    
T  15233197 agaccatatatttgattaactgaaatttttcagattggtacgaagagatgtacacattaa 15233138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 1251594 - 1251676
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||| |||| |  ||||||||  |||||||||||||| ||||||||||||||  | || ||||||||||| ||||||||    
T  1251594 atgtggtctcacaaatcatatatttagttaactgaaattttcgagagtggtacaaatgggtgtacacattaaggatgtctacc 1251676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 31273680 - 31273762
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||| |||| |||| ||||||||| |||| ||||||||| |||||||||||||| || |  |||||||||| || ||||||    
T  31273680 atgtggccacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagtatctacc 31273762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 38606946 - 38607028
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    |||||||||| || || |||||| |  |||||||||||||| |||||| |||||||| | || ||||||||||| ||||||||    
T  38606946 atgtggtcacgcaaaccatatatgtagttaactgaaattttggagagttgtacaaaggggtgtacacattaaggatgtctacc 38607028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 15233340 - 15233396
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    ||||||||||||| || ||||||||  |||||| |||||||| ||||||||||||||    
T  15233340 atgtggtcacacaaactatatatttaattaactaaaatttttcagagtggtacaaag 15233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26493323 - 26493227
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattgctcctt 112  Q
    ||||||||||| |||| ||||||||| |||| | |||||||| | ||||||| ||| |  || ||||||||||||  | || |||||||||||||||    
T  26493323 atgtggtcacatagaccatatatttgattaagtaaaattttttaaagtggtataaaaaagtgtacacattaagggcatatatctatcattgctcctt 26493227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 33286208 - 33286130
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtc 94  Q
    |||||||||| ||||| ||||||||| |||| | || ||||| |||| ||||||||  | || ||||||||||||||||    
T  33286208 atgtggtcacgcagaccatatatttggttaattaaatttttttagaggggtacaaatgggtgtacacattaagggtgtc 33286130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 6809919 - 6809959
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttt 56  Q
    ||||||||||||| || ||||||||| ||||||||||||||    
T  6809919 atgtggtcacacatactatatatttgattaactgaaatttt 6809959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 35922699 - 35922617
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||    
T  35922699 atgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtctacc 35922617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 36169392 - 36169302
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||||||||||  || ||||||||| |||||| |||||||| | ||||||||||||||| | |||||||||| |||||||||||||||||    
T  36169392 atgtggtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtctacctatcattg 36169302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 43262818 - 43262904
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||||||||||||||| ||||||||| ||||||||||||||| | ||| |||||||| | || ||||||||||||||||||| ||||    
T  43262818 atgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctacttatc 43262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 15221687 - 15221777
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    |||||||||||||||| ||||||||  ||||||||||||||| ||| || |||||||   || ||||||||| ||||||| ||||||||||    
T  15221687 atgtggtcacacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaaggtgtctgcctatcattg 15221777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 33958954 - 33958878
Alignment:
Q  28 agacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcatt 105  Q
    |||| ||||||||| |||| |||||||||| |||||||||||||| |||  ||| |||||||||||||||||||||||    
T  33958954 agaccatatatttggttaagtgaaatttttcagagtggtacaaag-gatatacatattaagggtgtctacctatcatt 33958878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 42034887 - 42034967
Alignment:
Q  24 acacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcat 104  Q
    ||||| || ||||||||| | ||||||||||||| |||||||||||||| |||| || |||||| | ||||||||||||||    
T  42034887 acacataccatatatttgatcaactgaaattttttagagtggtacaaagggatgtacgcattaaagatgtctacctatcat 42034967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 31189567 - 31189512
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaa 71  Q
    ||||||||||||| || ||||||||| |||||||||||||| ||||||||||||||    
T  31189567 atgtggtcacacatactatatatttggttaactgaaattttcgagagtggtacaaa 31189512  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 19621590 - 19621646
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    ||||||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||    
T  19621590 atgtggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaag 19621646  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 43461830 - 43461904
Alignment:
Q  28 agacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||| ||||||||| ||||||||||||||  | |||| ||||||| | | ||||||||||| |||||||||||||    
T  43461830 agaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatc 43461904  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 13312721 - 13312799
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||||||||||| |  |||||| || ||||||||||||||| ||||||||||||    | | ||||||||||||||||||||    
T  13312721 atgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaa----aagtacacattaagggtgtctacc 13312799  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 16095587 - 16095519
Alignment:
Q  33 atatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctat 101  Q
    ||||||||| |||| ||||||||| |||||||||| |||| | || |||||||||  ||||||||||||    
T  16095587 atatatttggttaattgaaattttcgagagtggtagaaaggggtgtacacattaaatgtgtctacctat 16095519  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 35922858 - 35922944
Alignment:
Q  19 tggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||| ||||||| ||| ||||| |||||| |||||||| | |||| ||||||| | || ||||||||||  ||||||||||||||||    
T  35922858 tggtcccacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 35922944  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 7156054 - 7156000
Alignment:
Q  33 atatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaa 87  Q
    ||||||||| ||||||||||||||  | ||||||||||| ||||| |||||||||    
T  7156054 atatatttgattaactgaaattttctaaagtggtacaaaaagatgtacacattaa 7156000  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 15221625 - 15221571
Alignment:
Q  18 gtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaag 72  Q
    ||||||||||| || ||||||||| |||||| ||||||| |||| ||||||||||    
T  15221625 gtggtcacacaaaccatatatttggttaactaaaattttcgagaatggtacaaag 15221571  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36169451 - 36169501
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggt 66  Q
    ||||||||||||| || ||||||||| | | ||||||||||||||||||||    
T  36169451 atgtggtcacacataccatatatttgatcagctgaaatttttgagagtggt 36169501  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 43262671 - 43262621
Alignment:
Q  59 agagtggtacaaagagatgcacacattaagggtgtctacctatcattgctc 109  Q
    ||||| |||||||||| || |||||||| || |||||||||||||||||||    
T  43262671 agagtagtacaaagaggtgtacacattagggatgtctacctatcattgctc 43262621  T

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Target: scaffold1126 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 328 - 409
Alignment:
Q  17 tgtggtcacacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacc 98  Q
    ||||| ||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  328 tgtggccacacagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgtttacc 409  T

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Target: scaffold1126; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 195 - 104
Alignment:
Q  16 atgtggtcacacagacaatatatttgtttaactgaaattttt-gagagtggtacaaagagatgcacacattaagggtgtctacctatcattg 106  Q
    ||||| |||||||| | ||||||||| |||||||||||||||  ||||||||||||| | ||| ||||||||| | ||||||||| ||||||    
T  195 atgtgatcacacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatgtctacctgtcattg 104  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 10745 - 10819
Alignment:
Q  28 agacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctacctatc 102  Q
    |||| ||||||||| |||| |||||||||  ||||||||||||||  ||| ||| ||||||| ||| ||||||||    
T  10745 agaccatatatttggttaattgaaattttctagagtggtacaaaggaatgtacatattaaggatgtttacctatc 10819  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 21496 - 21420
Alignment:
Q  24 acacagacaatatatttgtttaactgaaatttttgagagtggtacaaagagatgcacacattaagggtgtctaccta 100  Q
    ||||||||  |||||||| ||||||||||||||| | | ||||| |||  |||| |||||||||  |||||||||||    
T  21496 acacagaccgtatatttggttaactgaaattttttaaaatggtataaatggatgtacacattaaaagtgtctaccta 21420  T

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