View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20713_low_9 (Length: 390)
Name: NF20713_low_9
Description: NF20713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20713_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 41658756 - 41658392
Alignment:
| Q |
18 |
attttggtagctgtgtcaagttttgatag-cgtaagcatatatgatctttcttaatgccactataatagctagcatggtggtatatgttatgttcttt-g |
115 |
Q |
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| T |
41658756 |
attttggtagctgtgtcaagttttgatagacgtaagcatatatgatcttccttaatgccgctataatagctagcatggtggtatatgttatgttcttttg |
41658657 |
T |
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| Q |
116 |
agattctgacttgtgtggttgtagttgctactattatgttgtgatctttgatattgcacagcagtaattgatattcgatggccccaatcgcagaggcctt |
215 |
Q |
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| T |
41658656 |
agattctgacttgtgtggttgtagttgctactattatgttgtgatctttgatattgcacagcagtaattgatattccatggccccaatcgcagaggcctt |
41658557 |
T |
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| Q |
216 |
agacctagcaatttctgctacatacctcagctctgaattatggttgactgcagtctgcagatcttaatctagaactatagttggggtgatgtggttgtct |
315 |
Q |
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| T |
41658556 |
agacctagcaatttctgctacatacctcagctctgaattatggttgactgcagtctgcagatcttaatctagaactatagttgggatgttgtggttgtct |
41658457 |
T |
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| Q |
316 |
ttcaatgtatgtaaaatgtgattgatatgtgatatgatatatttctacttctgctttgatctgtg |
380 |
Q |
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| T |
41658456 |
ttcaatgtatgtaaaatatgattgatatgtgatatgatatatttctacttctgctttgatctgtg |
41658392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 41657324 - 41657249
Alignment:
| Q |
303 |
gatgtggttgtctttcaatgtatgtaaaatgtgattgatatgtgatatgatatatttctacttctgctttgatctg |
378 |
Q |
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| T |
41657324 |
gatgtggttgtctttctaagtacgttaaatgtgatcgatatgtgatatgatatgtttctacttctgctgtgatctg |
41657249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 41657411 - 41657325
Alignment:
| Q |
180 |
taattgatattcgatggccccaatcgcagaggccttagacctagcaatttctgctacatacctcagctctgaattatggttgactgc |
266 |
Q |
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| T |
41657411 |
taattgatattccataaccctaattgcagaggccttagaactagcaatttctgttaccgtgctcagttttgaactatggttgactgc |
41657325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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