View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20714_low_2 (Length: 390)
Name: NF20714_low_2
Description: NF20714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20714_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 27420329 - 27420656
Alignment:
| Q |
46 |
tggaaaccacctccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttgcaacaaatccagctcacn |
145 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27420329 |
tggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaatttgcaagaaatccagctcact |
27420428 |
T |
|
| Q |
146 |
nnnnnnnctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacgacatccttgaagctatcatc |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
27420429 |
tttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagtaataacacttccaaaagtacagcgacatccttgaagctgtcatc |
27420528 |
T |
|
| Q |
246 |
attttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattcattccaaattcttaatttg |
345 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27420529 |
attttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcataacattaagcaataggaaattcattccaaattcttaatttg |
27420628 |
T |
|
| Q |
346 |
atcaaatattaataaattagatgaaggt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
27420629 |
atcaaatattaataaattagatgaaggt |
27420656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 46 - 373
Target Start/End: Original strand, 44607536 - 44607863
Alignment:
| Q |
46 |
tggaaaccacctccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttgcaacaaatccagctcacn |
145 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44607536 |
tggaaaccaccgccgaccaattaattccacaattatcatgactgagtttttggaatataaaacgaatgaataacccaatttgcaagaaatccagctcact |
44607635 |
T |
|
| Q |
146 |
nnnnnnnctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacgacatccttgaagctatcatc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
44607636 |
tttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagtaataacacttccaaaagtacagcgacatccttgaagctgtcatc |
44607735 |
T |
|
| Q |
246 |
attttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattcattccaaattcttaatttg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44607736 |
attttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcataacattaagcaataggaaattcattccaaattcttaatttg |
44607835 |
T |
|
| Q |
346 |
atcaaatattaataaattagatgaaggt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
44607836 |
atcaaatattaataaattagatgaaggt |
44607863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 46 - 330
Target Start/End: Complemental strand, 18712344 - 18712059
Alignment:
| Q |
46 |
tggaaaccacctccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttgcaacaaatccagctcacn |
145 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18712344 |
tggaaaccatcaccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaatttgcaacaaatccaactcact |
18712245 |
T |
|
| Q |
146 |
nnnnnnn-ctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacgacatccttgaagctatcat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
18712244 |
ttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagcagtaacacttccaaaaggacagtgacatccttgaagctgtcat |
18712145 |
T |
|
| Q |
245 |
cattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattcattc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18712144 |
cattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattcattc |
18712059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 18712476 - 18712510
Alignment:
| Q |
17 |
tatgttattaataaaggactaataaaatatggaaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
18712476 |
tatgttattaataaaggactaataaaatatggaaa |
18712510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 362
Target Start/End: Complemental strand, 41290966 - 41290810
Alignment:
| Q |
204 |
taacacttccaaaagtacaacgacatccttgaagctatcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatca |
303 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||| | ||| ||||| | |||||| | |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
41290966 |
taacaattccaaaagtacagcgacttccttgaagttgtcaacatttccaacaagcattccaacagatccaaaggctacgacatccttgtgtgatcaatca |
41290867 |
T |
|
| Q |
304 |
ttacattaagcaataggaaattcattccaaattcttaatttgatcaaatattaataaat |
362 |
Q |
| |
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||||||||| || | ||| ||||||| | |||||||||| |||||||||| |||||| |
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|
| T |
41290866 |
ttacattaaaca--cgtaaagtcattcctatttcttaatttcatcaaatattgataaat |
41290810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 16899771 - 16899805
Alignment:
| Q |
17 |
tatgttattaataaaggactaataaaatatggaaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
16899771 |
tatgttattaataaaggactaataaaatatggaaa |
16899805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 1292665 - 1292695
Alignment:
| Q |
21 |
ttattaataaaggactaataaaatatggaaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
1292665 |
ttattaataaaggactaataaaatatggaaa |
1292695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 46111199 - 46111133
Alignment:
| Q |
244 |
tcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacatt |
310 |
Q |
| |
|
|||||| |||| |||||| ||||| || ||| |||| ||||||||||| ||||||||||||||||| |
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|
| T |
46111199 |
tcatttccgactagcttatcaacagattcaaatgctaagacatccttgtttgatcaatcattacatt |
46111133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 24157640 - 24157670
Alignment:
| Q |
17 |
tatgttattaataaaggactaataaaatatg |
47 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
24157640 |
tatgttattaataaaggactaataaaatatg |
24157670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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