View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_high_6 (Length: 319)
Name: NF20716_high_6
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 6878337 - 6878621
Alignment:
| Q |
17 |
cagaaacgcgtggtgaagtcagggccgatttccaaagtagcaacgaaacctaatgtgatcaggtttctcaacaatcctatgccaatggattttgcttctg |
116 |
Q |
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| T |
6878337 |
cagaagcgcgtggtaaagtcagggccgatttccaaagtagcaacgaaacctaatgtgatcaggtttctcaacaatcctatgccaatggattttgcttctg |
6878436 |
T |
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| Q |
117 |
gtcgtgacggaactgagaaaatgatgaatggtaagcatgataaggttttaaagctcgccccgccatcaacagtgggtggagttgggcttgctttaaggta |
216 |
Q |
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| T |
6878437 |
gtcgtgacggaactgagaaaatgatgaatggtaagcatgataaggttttaaagctcgccccgccatcaacagtgggtggagttgggcttgctttgaggta |
6878536 |
T |
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| Q |
217 |
tgctaatctgatcctactggcggagcgttgtctccatgcgcccgcgacagttggagaggacgcacgtgaggccttatacgagatg |
301 |
Q |
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| T |
6878537 |
tgctaatttgatcctactggcggagcgttgtctccatgcgcccgcgacagttggagaggacgcacgtgaggccttatacgagatg |
6878621 |
T |
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