View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_high_9 (Length: 255)
Name: NF20716_high_9
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 32344182 - 32344402
Alignment:
| Q |
13 |
aatatggtgtagggaaggttgggcactatttggaacaatttatttgtgacatttggcgccactataagaattggacaactttatttgacccacaaattaa |
112 |
Q |
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| T |
32344182 |
aatatggtgtagggaaggt-gggcactatttggaacaatttatttgtgacatttggcgccactataagaattggacaactttatttgacccacaaattaa |
32344280 |
T |
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| Q |
113 |
aggttccttaatctgaaatttatataatcagcaaaagcactaatgtacaatatatataatccaaaatcattaaagattgttttgtcaaatggttcctcct |
212 |
Q |
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| T |
32344281 |
aggttccttaatctgaaatttatataatcagcaaaagcactaatgtacaatatatataatccaaaatcataaaaaattgttttgtcaaatggt------t |
32344374 |
T |
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| Q |
213 |
aaccccttgctcaaattataaggttagt |
240 |
Q |
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|||||||| |||||||||||||| |||| |
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| T |
32344375 |
aaccccttcctcaaattataaggctagt |
32344402 |
T |
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