View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20716_low_1 (Length: 620)

Name: NF20716_low_1
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20716_low_1
NF20716_low_1
[»] scaffold0809 (2 HSPs)
scaffold0809 (18-605)||(1009-1595)
scaffold0809 (435-563)||(1645-1773)
[»] chr5 (33 HSPs)
chr5 (489-607)||(7126108-7126226)
chr5 (497-607)||(17762359-17762469)
chr5 (489-607)||(29444875-29444993)
chr5 (489-607)||(31799831-31799949)
chr5 (425-605)||(14143903-14144086)
chr5 (503-607)||(14411780-14411884)
chr5 (489-601)||(24074372-24074484)
chr5 (489-607)||(27159148-27159266)
chr5 (489-601)||(6817318-6817430)
chr5 (489-604)||(4919184-4919299)
chr5 (489-607)||(993937-994055)
chr5 (501-599)||(24650898-24650996)
chr5 (489-607)||(24837360-24837478)
chr5 (425-594)||(18336468-18336642)
chr5 (489-607)||(20709403-20709521)
chr5 (489-607)||(41001544-41001662)
chr5 (489-563)||(6817191-6817265)
chr5 (489-563)||(20709281-20709355)
chr5 (489-607)||(22571268-22571386)
chr5 (489-563)||(23979136-23979210)
chr5 (422-563)||(993748-993890)
chr5 (489-563)||(24650769-24650843)
chr5 (435-563)||(7125929-7126060)
chr5 (489-563)||(4919059-4919133)
chr5 (489-563)||(24074537-24074611)
chr5 (438-563)||(41001370-41001496)
chr5 (489-563)||(14144136-14144210)
chr5 (489-559)||(24837238-24837308)
chr5 (489-549)||(22571146-22571206)
chr5 (560-607)||(23979042-23979089)
chr5 (425-563)||(30512289-30512430)
chr5 (425-563)||(30552629-30552770)
chr5 (489-530)||(18336724-18336765)
[»] chr1 (37 HSPs)
chr1 (489-607)||(17606377-17606495)
chr1 (489-605)||(8292873-8292989)
chr1 (489-607)||(4907153-4907271)
chr1 (489-607)||(39711141-39711259)
chr1 (425-607)||(24467630-24467815)
chr1 (489-607)||(43539416-43539534)
chr1 (489-607)||(48072030-48072148)
chr1 (489-605)||(52058204-52058317)
chr1 (425-609)||(18462287-18462474)
chr1 (501-607)||(20995750-20995856)
chr1 (425-599)||(29696566-29696743)
chr1 (489-600)||(30299300-30299411)
chr1 (492-607)||(33628881-33628996)
chr1 (503-605)||(13229815-13229917)
chr1 (501-607)||(34749297-34749402)
chr1 (505-607)||(42510205-42510307)
chr1 (489-563)||(48072196-48072270)
chr1 (489-607)||(39826241-39826355)
chr1 (489-604)||(39970839-39970954)
chr1 (506-592)||(30780270-30780356)
chr1 (489-563)||(4907031-4907105)
chr1 (489-607)||(16294138-16294256)
chr1 (489-563)||(24467862-24467936)
chr1 (489-563)||(39826119-39826193)
chr1 (489-563)||(42510083-42510157)
chr1 (489-563)||(52058080-52058154)
chr1 (490-563)||(7473862-7473935)
chr1 (489-563)||(8293042-8293116)
chr1 (489-563)||(20995903-20995977)
chr1 (489-563)||(18462519-18462593)
chr1 (489-563)||(34749206-34749280)
chr1 (489-563)||(39711307-39711381)
chr1 (489-562)||(29696794-29696867)
chr1 (503-563)||(39970729-39970789)
chr1 (505-563)||(13229966-13230024)
chr1 (489-563)||(30299466-30299540)
chr1 (435-480)||(17606315-17606360)
[»] chr3 (46 HSPs)
chr3 (489-607)||(14161940-14162058)
chr3 (489-607)||(5800674-5800792)
chr3 (425-607)||(15328464-15328647)
chr3 (489-594)||(52552892-52552997)
chr3 (489-605)||(30500234-30500350)
chr3 (489-605)||(38283619-38283735)
chr3 (489-607)||(14262227-14262345)
chr3 (425-607)||(43572390-43572578)
chr3 (489-607)||(45969984-45970102)
chr3 (501-605)||(21632977-21633081)
chr3 (501-607)||(19112956-19113062)
chr3 (489-607)||(45003565-45003683)
chr3 (489-604)||(20853890-20854005)
chr3 (489-604)||(33372475-33372590)
chr3 (489-607)||(14171777-14171895)
chr3 (489-607)||(16722060-16722178)
chr3 (425-605)||(9267168-9267351)
chr3 (489-607)||(11003801-11003919)
chr3 (507-604)||(4204902-4204999)
chr3 (501-605)||(17465560-17465664)
chr3 (425-607)||(35995869-35996052)
chr3 (489-607)||(47575463-47575581)
chr3 (489-563)||(4204777-4204851)
chr3 (489-607)||(49986597-49986715)
chr3 (489-563)||(14171655-14171729)
chr3 (489-563)||(38283785-38283859)
chr3 (489-566)||(43572623-43572700)
chr3 (489-584)||(17649224-17649319)
chr3 (435-563)||(30500054-30500184)
chr3 (489-563)||(9267044-9267118)
chr3 (425-563)||(35995679-35995821)
chr3 (489-563)||(33372640-33372713)
chr3 (489-563)||(52552761-52552835)
chr3 (503-563)||(49986763-49986823)
chr3 (425-563)||(45003731-45003872)
chr3 (489-563)||(14262105-14262179)
chr3 (489-563)||(15328695-15328769)
chr3 (489-563)||(16722226-16722300)
chr3 (489-563)||(19112834-19112908)
chr3 (489-563)||(20853765-20853839)
chr3 (489-563)||(21633131-21633205)
chr3 (500-563)||(17465448-17465511)
chr3 (425-480)||(19720334-19720389)
chr3 (501-563)||(45970150-45970212)
chr3 (435-480)||(27946120-27946165)
chr3 (415-480)||(52552681-52552746)
[»] chr8 (33 HSPs)
chr8 (413-609)||(42113173-42113370)
chr8 (489-607)||(10108439-10108557)
chr8 (489-607)||(2583389-2583507)
chr8 (489-605)||(21148129-21148245)
chr8 (425-607)||(14767698-14767881)
chr8 (489-607)||(17623078-17623196)
chr8 (489-605)||(26136754-26136870)
chr8 (460-606)||(22494425-22494570)
chr8 (489-606)||(14820363-14820480)
chr8 (491-607)||(5554940-5555056)
chr8 (489-605)||(30789700-30789816)
chr8 (501-604)||(42605834-42605937)
chr8 (514-607)||(43851855-43851948)
chr8 (503-607)||(7689606-7689710)
chr8 (435-563)||(42112996-42113127)
chr8 (501-593)||(43481519-43481611)
chr8 (425-563)||(43851666-43851807)
chr8 (501-563)||(7689758-7689820)
chr8 (489-563)||(10108605-10108679)
chr8 (489-563)||(14820529-14820603)
chr8 (489-563)||(26532852-26532926)
chr8 (429-563)||(30789513-30789650)
chr8 (489-563)||(21148006-21148080)
chr8 (489-563)||(26136920-26136994)
chr8 (489-566)||(5555101-5555178)
chr8 (489-563)||(14767576-14767650)
chr8 (489-582)||(21144721-21144814)
chr8 (489-560)||(17622957-17623027)
chr8 (493-560)||(35368652-35368719)
chr8 (505-563)||(2583555-2583613)
chr8 (501-563)||(22494619-22494681)
chr8 (425-474)||(2583321-2583370)
chr8 (489-558)||(10171383-10171452)
[»] chr4 (37 HSPs)
chr4 (489-609)||(3018081-3018201)
chr4 (489-607)||(26252337-26252455)
chr4 (489-607)||(46046615-46046733)
chr4 (425-605)||(3273622-3273807)
chr4 (489-605)||(37012900-37013016)
chr4 (435-607)||(9396710-9396886)
chr4 (489-605)||(13132134-13132250)
chr4 (489-601)||(15640784-15640896)
chr4 (489-605)||(18713029-18713145)
chr4 (489-604)||(38574162-38574277)
chr4 (489-607)||(9619049-9619166)
chr4 (489-607)||(34064173-34064291)
chr4 (489-605)||(7819083-7819199)
chr4 (425-606)||(31090253-31090438)
chr4 (489-604)||(48580060-48580175)
chr4 (425-607)||(9516801-9516987)
chr4 (506-607)||(18667375-18667476)
chr4 (503-605)||(4355964-4356066)
chr4 (489-605)||(31944019-31944135)
chr4 (489-563)||(13132010-13132084)
chr4 (489-563)||(15640950-15641024)
chr4 (425-584)||(41947070-41947231)
chr4 (489-607)||(35376231-35376346)
chr4 (489-563)||(38574037-38574111)
chr4 (437-563)||(46046443-46046567)
chr4 (501-563)||(3273855-3273917)
chr4 (489-563)||(48259986-48260060)
chr4 (425-563)||(31090061-31090204)
chr4 (489-563)||(9516679-9516753)
chr4 (489-563)||(37012776-37012850)
chr4 (490-563)||(7819249-7819322)
chr4 (425-563)||(9396934-9397075)
chr4 (489-563)||(26252472-26252546)
chr4 (489-563)||(31944185-31944259)
chr4 (502-563)||(4356116-4356177)
chr4 (489-559)||(9619218-9619288)
chr4 (489-561)||(36888917-36888989)
[»] chr7 (37 HSPs)
chr7 (489-607)||(6465923-6466041)
chr7 (489-609)||(38879913-38880033)
chr7 (425-604)||(12006734-12006917)
chr7 (489-607)||(28218354-28218472)
chr7 (489-607)||(41600149-41600267)
chr7 (425-605)||(7658162-7658342)
chr7 (489-604)||(1250400-1250515)
chr7 (501-607)||(23704742-23704848)
chr7 (489-607)||(31851430-31851548)
chr7 (501-605)||(20963688-20963791)
chr7 (489-605)||(23383693-23383809)
chr7 (501-605)||(48672472-48672576)
chr7 (489-607)||(20419727-20419845)
chr7 (489-607)||(25772523-25772640)
chr7 (489-605)||(20458884-20459000)
chr7 (426-607)||(48648421-48648603)
chr7 (489-605)||(10409443-10409559)
chr7 (425-563)||(12006542-12006683)
chr7 (505-605)||(44817028-44817128)
chr7 (489-563)||(23704896-23704970)
chr7 (489-563)||(24195031-24195105)
chr7 (418-563)||(25772358-25772506)
chr7 (523-605)||(33162638-33162720)
chr7 (489-563)||(38879793-38879867)
chr7 (489-562)||(7658040-7658113)
chr7 (489-562)||(28218248-28218321)
chr7 (502-563)||(48672361-48672422)
chr7 (503-563)||(31851322-31851382)
chr7 (489-568)||(16995268-16995347)
chr7 (425-476)||(48648263-48648314)
chr7 (489-563)||(20419605-20419679)
chr7 (489-563)||(41600027-41600101)
chr7 (492-563)||(44816907-44816978)
chr7 (489-563)||(10409609-10409683)
chr7 (489-563)||(20458760-20458834)
chr7 (489-563)||(23383569-23383643)
chr7 (503-563)||(33162770-33162830)
[»] chr6 (27 HSPs)
chr6 (489-607)||(9481251-9481369)
chr6 (425-607)||(32017696-32017880)
chr6 (489-607)||(33637628-33637746)
chr6 (493-603)||(10321926-10322036)
chr6 (489-601)||(30618031-30618142)
chr6 (490-605)||(2299503-2299617)
chr6 (489-609)||(24732007-24732127)
chr6 (503-605)||(30459094-30459196)
chr6 (505-605)||(3230056-3230155)
chr6 (435-607)||(26385469-26385641)
chr6 (504-607)||(18500538-18500641)
chr6 (418-563)||(18500309-18500457)
chr6 (428-563)||(10321737-10321873)
chr6 (489-563)||(9854122-9854196)
chr6 (501-563)||(33637763-33637825)
chr6 (503-563)||(14680965-14681025)
chr6 (489-563)||(24732173-24732247)
chr6 (489-563)||(33714556-33714630)
chr6 (489-549)||(19284198-19284258)
chr6 (409-480)||(2299635-2299706)
chr6 (489-559)||(26385347-26385417)
chr6 (489-563)||(30458970-30459044)
chr6 (551-604)||(33714681-33714734)
chr6 (489-528)||(17142746-17142785)
chr6 (505-607)||(17142829-17142930)
chr6 (544-605)||(14681075-14681136)
chr6 (503-563)||(32017619-32017679)
[»] chr2 (35 HSPs)
chr2 (489-607)||(20498815-20498932)
chr2 (489-607)||(23854857-23854975)
chr2 (489-607)||(39878171-39878289)
chr2 (489-607)||(42670910-42671028)
chr2 (491-607)||(22263382-22263498)
chr2 (501-609)||(23806033-23806141)
chr2 (505-607)||(26560745-26560847)
chr2 (501-607)||(26236208-26236313)
chr2 (489-607)||(17463160-17463278)
chr2 (489-603)||(17850781-17850895)
chr2 (435-605)||(26135828-26136002)
chr2 (435-607)||(19251482-19251657)
chr2 (489-607)||(15106136-15106254)
chr2 (489-607)||(33290118-33290236)
chr2 (490-607)||(13284599-13284716)
chr2 (425-563)||(15106302-15106442)
chr2 (489-563)||(19251705-19251779)
chr2 (489-563)||(22263260-22263334)
chr2 (429-563)||(26560561-26560697)
chr2 (503-563)||(26136052-26136112)
chr2 (425-563)||(17850588-17850729)
chr2 (489-563)||(17463326-17463400)
chr2 (489-563)||(23806187-23806261)
chr2 (489-563)||(30390528-30390602)
chr2 (489-549)||(13254566-13254626)
chr2 (425-559)||(34548575-34548712)
chr2 (501-563)||(13284489-13284551)
chr2 (489-563)||(20498980-20499054)
chr2 (489-563)||(26236330-26236404)
chr2 (435-528)||(23854699-23854796)
chr2 (489-561)||(30959909-30959981)
chr2 (501-563)||(39878337-39878399)
chr2 (500-557)||(13254677-13254734)
chr2 (489-526)||(44098894-44098931)
chr2 (503-563)||(33290284-33290344)
[»] scaffold0185 (2 HSPs)
scaffold0185 (489-604)||(4063-4178)
scaffold0185 (415-561)||(3860-4010)
[»] scaffold0176 (1 HSPs)
scaffold0176 (425-604)||(15827-16005)
[»] scaffold0361 (2 HSPs)
scaffold0361 (501-607)||(4644-4750)
scaffold0361 (489-563)||(4798-4872)
[»] scaffold0881 (1 HSPs)
scaffold0881 (504-607)||(411-513)
[»] scaffold0141 (2 HSPs)
scaffold0141 (514-605)||(8417-8508)
scaffold0141 (489-563)||(8557-8631)
[»] scaffold0449 (2 HSPs)
scaffold0449 (489-607)||(7390-7508)
scaffold0449 (489-526)||(7295-7332)
[»] scaffold0117 (1 HSPs)
scaffold0117 (489-563)||(12217-12291)
[»] scaffold0118 (1 HSPs)
scaffold0118 (180-245)||(41814-41879)


Alignment Details
Target: scaffold0809 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Original strand, 1009 - 1595
Alignment:
Q  18 attttcaagtcataaactaagcacctcgatctatataaataccacactatagccacagcttgttcaccaccattgagtatttactacaaacataatataa 117  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  1009 attttcaagtaataaactaagcacctcgatctata--aataccacactatagccacaacttgttcaccaccattgagtatttactacaaccataatataa 1106  T
Q  118 gttgtgttgtgaaagtatggctcttactttggcacacacattctttcgtatactcttatttgtaggttcactctcaatattcctagtgaccccttcctct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107 gttgtgttgtgaaagtatggctcttactttggcacacacattctttcgtatactcttatttgtaggttcactctcaatattcctagtgaccccttcctct 1206  T
Q  218 tgtcttaaacctaggaagcttcttaatgccacttcatacttctcctttgaagatttctcatcttcagaggctactttctatggacctcccgacggtgatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  1207 tgtcttaaacctaggaagcttcttaatgccacttcatacttctcttttgaagatttctcatcttcagaggctactttctatggatctcctgacggtgatg 1306  T
Q  318 gaagtgaaggnnnnnnnnnnnnnnnnntacaaatatttgtcgcatgtagtttttccttgattaagattcaattagtgtaatcaaattatttttgaaattg 417  Q
    ||||||||||                 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1307 gaagtgaagg--tatatatatatatattacaaatatttgtcgcatatagtttttccttgattaagattcaattagtgtaatcaaattatttttgaaattg 1404  T
Q  418 ttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt---nnnnnnnnttagattatgttcctgtaatttcata 514  Q
    |||||| ||||||||  ||||||||  || ||||||| |||||||||||||||||||||||||           ||||||||||| |||||||||||| |    
T  1405 ttttaagggtaaatacctcttttcgacccggtaatatttgcgaatttcgattttagtccctgtaaaaaaaagatttagattatgtccctgtaatttcaga 1504  T
Q  515 ttcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  1505 ttcttccacttttggtccctcctttcatcacgtcagcagaatctacataaattacgtccctataatttcagattcctcccacttttggtcc 1595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 563
Target Start/End: Complemental strand, 1773 - 1645
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnnttagattatgttcctgtaatttcatattcttccacttttgattcct 534  Q
    ||||||||| ||||||||||   |||||| || ||||||||||| |        ||||||||||| | |||||||||| ||||||||||||||| | |||    
T  1773 tcttttcgtccctgtaatattaacgaattccggttttagtccctataaaaaaaattagattatgtccttgtaatttcagattcttccacttttggtccct 1674  T
Q  535 cctttcatcacgtcagcagaatctgcata 563  Q
    |   ||| ||| |||||||||||||||||    
T  1673 cacatcaccacatcagcagaatctgcata 1645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 7126226 - 7126108
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  7126226 ttagattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcatatt 7126127  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  7126126 cctcccacttttggtccct 7126108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 497 - 607
Target Start/End: Original strand, 17762359 - 17762469
Alignment:
Q  497 tgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccac 596  Q
    |||||||||||||||| ||||||||||||||| | |||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||| |    
T  17762359 tgttcctgtaatttcagattcttccacttttggtccctcctttaatcacgtaagcagaatctgcataaattacgtccctgtaatttcatattcctcccgc 17762458  T
Q  597 ttttggtccct 607  Q
    |||||||||||    
T  17762459 ttttggtccct 17762469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 29444875 - 29444993
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| | |||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  29444875 ttagattatgtccttgtaatttcatattcttctacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 29444974  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| | |||||||||||    
T  29444975 cctcctagttttggtccct 29444993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 31799949 - 31799831
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||    
T  31799949 ttagattttgtccatgtaatttcagattcttcctcttttgatccctcctttcatcacgtcagcagaatttgcataaattacgtccctttaatttcagatt 31799850  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  31799849 cctcccacttttggtccct 31799831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 425 - 605
Target Start/End: Original strand, 14143903 - 14144086
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| || |||||||||||||           ||||||| ||| |||||||||||||||||||||    
T  14143903 ggtaaatacctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcatattcttcc 14144002  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    ||||||| | |||| |||||||||||||| ||||||||||||||||||||| || |||||||| |||||| |||||||||||||    
T  14144003 acttttggtacctcatttcatcacgtcagtagaatctgcataaattacgtccctgtaatttcagattccttccacttttggtcc 14144086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 503 - 607
Target Start/End: Original strand, 14411780 - 14411884
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttgg 602  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||||    
T  14411780 tgtaatttcagattcttccacttttggtccctcctttcatcacgtcagcagaatttgcataaattacgtccctgtaatttcagattcctcccacttttgg 14411879  T
Q  603 tccct 607  Q
    |||||    
T  14411880 tccct 14411884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 489 - 601
Target Start/End: Original strand, 24074372 - 24074484
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||    
T  24074372 ttagattttgtctctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccccataatttcagatt 24074471  T
Q  589 cctcccacttttg 601  Q
    | |||||||||||    
T  24074472 catcccacttttg 24074484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 27159266 - 27159148
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  27159266 ttagattttgtccctgtaattttatattcttccatttttggtcccttctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 27159167  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  27159166 cctcccacttttgatccct 27159148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 601
Target Start/End: Complemental strand, 6817430 - 6817318
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||    
T  6817430 ttagattttgtccctgtaatttcatattcttccacttttggtcactcctttcatcacatcagcagaatatgcataaattacgtccctgtaatttcaaatt 6817331  T
Q  589 cctcccacttttg 601  Q
    |||||||||||||    
T  6817330 cctcccacttttg 6817318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 4919299 - 4919184
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||||| ||||||||||||| |||| |||||| |||||||||||||||  | ||||||||||||    
T  4919299 ttagattttgtccctgtaatttcagattcttctacttttgatccctcctttcatcaagtcaacagaatatgcataaattacgtccttgtaatttcatatt 4919200  T
Q  589 cctcccacttttggtc 604  Q
    ||||| ||||||||||    
T  4919199 cctccaacttttggtc 4919184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 994055 - 993937
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||||||||| || ||||||||||||||| | |||||||| |||| |||| ||||||||| |||||||||||| || |||||||| |||    
T  994055 ttagattttgtccctgtaattgcagattcttccacttttggtccctccttttatcatgtcaacagaatctgtataaattacgtccctgtaatttcagatt 993956  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  993955 cctcccacttttggtccct 993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 599
Target Start/End: Complemental strand, 24650996 - 24650898
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttt 599  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||| ||||||||||    
T  24650996 cctgtaattttagattcttccacttttgatccctcctttcatcacgtcagcagaatccgcataaattacatccctgtaatttcatatttctcccacttt 24650898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 24837478 - 24837360
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||||  | |||||||| |||    
T  24837478 ttagattttgtccctgtaatttcaaattcttctacttttgctccctcctttcatcaagtcaacagaatctgcataaattacgtccttgtaatttcagatt 24837379  T
Q  589 cctcccacttttggtccct 607  Q
    |||| ||||||||||||||    
T  24837378 cctctcacttttggtccct 24837360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 425 - 594
Target Start/End: Original strand, 18336468 - 18336642
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-----ttagattatgttcctgtaatttcatattctt 519  Q
    ||||||||| ||||||||| ||| ||||||  ||||||| ||||||||||||||||             ||||||| ||| |||||||||||| ||||||    
T  18336468 ggtaaatatctcttttcgtccctataatattagcgaattccgattttagtccctgtaaaaaaaaaagatttagattttgtccctgtaatttcagattctt 18336567  T
Q  520 ccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctccc 594  Q
    || |||||||| |||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||| ||||    
T  18336568 ccgcttttgatccctcctttcatcacatcagcagaatttgcataaattacgtccctgtaatttcagattcgtccc 18336642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 20709521 - 20709403
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||||||||||||||||||  | | |||||||||||| |||||||||| |||||||||||| || || |||||||| |||    
T  20709521 ttagattttgtccatgtaatttcatattcttccactttttgtccttcctttcatcacatcagcagaatatgcataaattacatccctgtaatttcagatt 20709422  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  20709421 cctcccacttttgatccct 20709403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 41001662 - 41001544
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||| |||||||| ||||||||||||||| | ||||||||||||| |||| ||||| || ||||||||| ||| || ||||||||| ||    
T  41001662 ttagattttgtccctataatttcagattcttccacttttggtccctcctttcatcaagtcaacagaacctacataaattatgtcactgtaatttcatctt 41001563  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||| ||||||||    
T  41001562 cctcccacttctggtccct 41001544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 6817191 - 6817265
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| | |||||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||||||    
T  6817191 ttagattatgtccatgtaatttcagattcttccacttttggtccctcatttcaccacgtcagcagaatctgcata 6817265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 20709281 - 20709355
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||||||    
T  20709281 ttagattctgtccctgtaatttcaaattcttccacttttggtccctcatttcaccacgtcagcagaatctgcata 20709355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 22571386 - 22571268
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||||| |||||||||| |||||||   ||||| | |||| ||||| ||||||| || ||||||||||||||||||| || ||||||||  ||    
T  22571386 ttagattttgttcatgtaatttcaaattcttctcgttttgctccctcatttcaccacgtcaacaaaatctgcataaattacgtccctgtaatttcaggtt 22571287  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| || ||||||||||    
T  22571286 cctcctacatttggtccct 22571268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 23979210 - 23979136
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||||||    
T  23979210 ttagattttgtccctgtaatttcaaattcttccacttttggtccctcatttcaccacgtcagcagaatctgcata 23979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 422 - 563
Target Start/End: Original strand, 993748 - 993890
Alignment:
Q  422 aaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttc 520  Q
    ||||||||||| ||||||||||  |||||||||  ||||||| || |||||||||||||         |||||||  || | ||||||||||||||||||    
T  993748 aaaggtaaatacttcttttcgtctctgtaatattagcgaattccggttttagtccctgtaaaaaaaaattagatttagtccttgtaatttcatattcttc 993847  T
Q  521 cacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||| | |||| || || ||||| |||||||||||||||    
T  993848 cacttttggtccctcattccaccacgtaagcagaatctgcata 993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 24650769 - 24650843
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| |||||||||||||||||||||||||||||||| |  ||| || || |||||||||| ||||||||||    
T  24650769 ttagattttgttcctgtaatttcatattcttccacttttggtagctcattccaccacgtcagcaaaatctgcata 24650843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 563
Target Start/End: Original strand, 7125929 - 7126060
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttccacttttgatt 531  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||||           ||||||| ||| ||| |||||||| ||||||||||||||| |     
T  7125929 tcttttcgttcctgtaatattagcgaattccgattttagtccctgtaaaaaaaagatttagattttgtccctataatttcagattcttccacttttggtc 7126028  T
Q  532 cctcctttcatcacgtcagcagaatctgcata 563  Q
    |||  || || |||||||||||||||||||||    
T  7126029 ccttattccaccacgtcagcagaatctgcata 7126060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 4919059 - 4919133
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||| |||||||| ||||||    
T  4919059 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatttgcata 4919133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 24074611 - 24074537
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||  ||| | |||||||||||||||||||||    
T  24074611 ttagattttgtccttgtaatttcatattcttccacttttggtcccttatttaaccacgtcagcagaatctgcata 24074537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 563
Target Start/End: Original strand, 41001370 - 41001496
Alignment:
Q  438 tttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttccacttttgattcctcc 536  Q
    |||||| ||||||||||  |||||||||| |||||||||||||         ||||||| ||| |||||||||||||||||||||||||||| | | ||     
T  41001370 tttcgtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaattagattttgtccctgtaatttcatattcttccacttttggtccttca 41001469  T
Q  537 tttcatcacgtcagcagaatctgcata 563  Q
    || || || || |||||||||||||||    
T  41001470 ttccaccatgtaagcagaatctgcata 41001496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 14144210 - 14144136
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||  || || ||||||| |||||||||||||    
T  14144210 ttagattttgtccctgtaatttcaaattcttccacttttggtcccttattccaccacgtcaccagaatctgcata 14144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 559
Target Start/End: Original strand, 24837238 - 24837308
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctg 559  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||    
T  24837238 ttagattttgtccttgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctg 24837308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 22571146 - 22571206
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtca 549  Q
    ||||||||| |  ||||||||||||||||||||||||||| | |||| ||||| |||||||    
T  22571146 ttagattatatctctgtaatttcatattcttccacttttggtccctcatttcaccacgtca 22571206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 607
Target Start/End: Original strand, 23979042 - 23979089
Alignment:
Q  560 cataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    |||||||||||||  | |||||||||||| ||||||||||||||||||    
T  23979042 cataaattacgtccttgtaatttcatatttctcccacttttggtccct 23979089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 30512289 - 30512430
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||| ||||||||| ||||||||||  | |||||| | |||||||||||||           |||||||  || |||||||||||| ||| ||||    
T  30512289 ggtaaatatctcttttcgtccctgtaatattagtgaattttggttttagtccctgtaaaaaaaggatttagatttggtccctgtaatttcagatttttcc 30512388  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| | |||| || || ||||| |||||||||||||||    
T  30512389 acttttggtccctcattccaccacgtaagcagaatctgcata 30512430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 30552629 - 30552770
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||| ||||||||| ||||||||||  | |||||| | |||||||||||||           |||||||  || |||||||||||| ||| ||||    
T  30552629 ggtaaatatctcttttcgtccctgtaatattagtgaattttggttttagtccctgtaaaaaaaggatttagatttggtccctgtaatttcagatttttcc 30552728  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| | |||| || || ||||| |||||||||||||||    
T  30552729 acttttggtccctcattccaccacgtaagcagaatctgcata 30552770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 18336765 - 18336724
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgat 530  Q
    ||||||| ||| |||||||||||| |||||||||||||||||    
T  18336765 ttagattttgtccctgtaatttcagattcttccacttttgat 18336724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 9e-44; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 17606377 - 17606495
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  17606377 ttagattttgttcctgtaatttcatattcttccacttttggtccctcatttcatcacgtcagcagaatctgtataaattacgtccctgtaatttcatatt 17606476  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  17606477 cctcccacttttggtccct 17606495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 8292873 - 8292989
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  8292873 ttagattttgtccctgaaatttcatattcttccacttttggttcctcttttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 8292972  T
Q  589 cctcccacttttggtcc 605  Q
    ||||| |||||||||||    
T  8292973 cctcctacttttggtcc 8292989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 4907271 - 4907153
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||    
T  4907271 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcacgtcagtagaatctgcataaattacgtccctgtaatttcagatt 4907172  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| |||||||||||||    
T  4907171 cctcctacttttggtccct 4907153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 39711141 - 39711259
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  39711141 ttagattttgtccttgtaatttcatattcttccacttttggtccctcctttaatcacgtcagcagaatctgcataaattacgtccttgtaatttcatatt 39711240  T
Q  589 cctcccacttttggtccct 607  Q
    |||||| ||||||||||||    
T  39711241 cctcccgcttttggtccct 39711259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 24467630 - 24467815
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| | ||||||||||||||           ||||||| ||| |||||||||||| ||||||||    
T  24467630 ggtaaatacatcttttcgtccctgtaatattagcgaattccaattttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcagattcttcc 24467729  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    ||||||| | ||||||||||||| ||||  |||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  24467730 acttttggtccctcctttcatcaagtcattagaatctgcataaattacgtcattgtaatttcatattcctcccacttttggtccct 24467815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 43539416 - 43539534
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||| | |||    
T  43539416 ttagattttgtccctgtaattttatattgttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaattttagatt 43539515  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  43539516 cctcccacttttgctccct 43539534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 48072030 - 48072148
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||||||||| | |||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||    
T  48072030 ttagattttgtccctgtaatttcatattattccacttttgctccctcctttcatcacatcagcagaatatgcataaattacgtccctgtaatttcaaatt 48072129  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  48072130 cctcccacttttgatccct 48072148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 52058317 - 52058204
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||   |||||||||||||||||||||| |||| |||||| |||    
T  52058317 ttagattatgtccctgtaatttcagattcttccacttttggtccctcctttcatcacgt---cagaatctgcataaattacgtccctatgatttcagatt 52058221  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  52058220 cctcccacttttggtcc 52058204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 425 - 609
Target Start/End: Original strand, 18462287 - 18462474
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| || |||||||||||||           ||||||| ||| |||||||||||| ||||||||    
T  18462287 ggtaaatacctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcagattcttcc 18462386  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccctat 609  Q
    | ||||| | ||||||||||||| ||||  |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  18462387 atttttggtccctcctttcatcaagtcattagaatctgcataaattacgtcattgtaatttcatattcctcccacttttggtccctat 18462474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 20995750 - 20995856
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||| |||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  20995750 cctgtaattttatattctttcacttttggtcccttctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagattcctcccactttt 20995849  T
Q  601 ggtccct 607  Q
     ||||||    
T  20995850 cgtccct 20995856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 425 - 599
Target Start/End: Original strand, 29696566 - 29696743
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  |||||||||| |||||||| ||||           ||||||| ||| || ||||||||||||||||||    
T  29696566 ggtaaatacctcttttcgtccctgtaatattagcgaatttcggttttagtctctgtaaaaaaaagatttagattttgtccccgtaatttcatattcttcc 29696665  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttt 599  Q
    ||||||  |  ||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  29696666 actttttgtcactcctttcatcacatcggcagaatctgcataaattatgtccctataatttcatattcctcccacttt 29696743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 600
Target Start/End: Original strand, 30299300 - 30299411
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  |||||||||||| |||| |||||||| ||||||||||||| || |||||||| |||    
T  30299300 ttagattttgtccctgtaatttcatattcttccacttttggtctctcctttcatcaagtcaacagaatctccataaattacgtccctgtaatttcagatt 30299399  T
Q  589 cctcccactttt 600  Q
    ||||||||||||    
T  30299400 cctcccactttt 30299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 492 - 607
Target Start/End: Complemental strand, 33628996 - 33628881
Alignment:
Q  492 gattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcct 591  Q
    |||| ||| |||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||| ||||||||| ||| || |||||||| ||||||    
T  33628996 gattttgtccctgtaatttcagattcttccacttttggtccctcctttaatcacgtcagcagaatctacataaattatgtccctgtaatttcaaattcct 33628897  T
Q  592 cccacttttggtccct 607  Q
    ||| ||||||||||||    
T  33628896 cccgcttttggtccct 33628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 503 - 605
Target Start/End: Original strand, 13229815 - 13229917
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttgg 602  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||| || ||||||||||||||||||| || |||||||| ||||||| |||||||||    
T  13229815 tgtaatttcatattcttccacttttgatcactcctttcatcaagtcaacataatctgcataaattacgtccctgtaatttcagattcctctcacttttgg 13229914  T
Q  603 tcc 605  Q
    |||    
T  13229915 tcc 13229917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 34749402 - 34749297
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||| ||||||||    
T  34749402 cctgtaatttcagattcttccacttttggtacctcctttaatcacgtcagcagaatctgcataaattacatccctgtaatttcagattcct-ccactttt 34749304  T
Q  601 ggtccct 607  Q
    |||||||    
T  34749303 ggtccct 34749297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 505 - 607
Target Start/End: Complemental strand, 42510307 - 42510205
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    |||||||| |||||||||||| |  | |||| |||||||||||||||||||||||||||||||||  | || |||||||| |||||||||||||||||||    
T  42510307 taatttcagattcttccacttgtattccctcatttcatcacgtcagcagaatctgcataaattacacccctgtaatttcagattcctcccacttttggtc 42510208  T
Q  605 cct 607  Q
    |||    
T  42510207 cct 42510205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 48072270 - 48072196
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||    
T  48072270 ttagattatgtccctgtaatttcatattcttccacttttgggtcctcatttcaccacgtcagcagaatctgcata 48072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 39826355 - 39826241
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| |||||||||||||||     ||||||||||||||||||| ||||||||| |||||||||  | |||||| | |||    
T  39826355 ttagattttgtccctgtaatttcagattcttccacttttg----gtcctttcatcacgtcagcaaaatctgcatcaattacgtccttgtaattttagatt 39826260  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  39826259 cctcccacttttgatccct 39826241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 39970954 - 39970839
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||| | || |||||||||||| | ||| |||||||||||||||||||||| |||||||||  ||| ||  ||||| | |||    
T  39970954 ttagattttgtccctgtaattttagatccttccacttttggtcccttctttcatcacgtcagcagaatccgcataaattgtgtccctgaaattttagatt 39970855  T
Q  589 cctcccacttttggtc 604  Q
    ||||||||||||||||    
T  39970854 cctcccacttttggtc 39970839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 30780356 - 30780270
Alignment:
Q  506 aatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctc 592  Q
    |||||||||||| |||||||||||| | || ||  ||||||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  30780356 aatttcatattcctccacttttgatccttcattcaatcacgtcagcagaatctgtataaattacgtcattgtaatttcatattcctc 30780270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 4907031 - 4907105
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||||||| |||||||||||    
T  4907031 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtcagccgaatctgcata 4907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 16294256 - 16294138
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | ||||||||||||||| |||||||||| | |||  ||| | || ||||||||||||| ||||||||||||| || ||||||   |||    
T  16294256 ttagattttgtccttgtaatttcatattcctccacttttggtcccttatttaaccatgtcagcagaatctacataaattacgtccctgtaatttatgatt 16294157  T
Q  589 cctcccacttttggtccct 607  Q
    ||  |||||||||||||||    
T  16294156 ccatccacttttggtccct 16294138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 24467936 - 24467862
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| ||||| |||||||| ||||||||||||    
T  24467936 ttagattttgtccctgtaatttcagattcttccacttttggtccctcatttcaccacgtcagtagaatctgcata 24467862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 39826119 - 39826193
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| |||| || || ||||| |||||||||||||||    
T  39826119 ttagattttgtccctgtaatttcagattcttccacttttgatccctcattccaccacgttagcagaatctgcata 39826193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 42510083 - 42510157
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||  | |||| ||||| ||| |||||||||||||||||    
T  42510083 ttagattttgtccctgtaatttcatattcttccacttttagtccctcatttcaccacatcagcagaatctgcata 42510157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 52058080 - 52058154
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||| ||||| |||||||||||| ||||||||||||||| | |||| ||||| ||| |||||||||||||||||    
T  52058080 ttagactatgtccctgtaatttcagattcttccacttttggtccctcatttcaccacatcagcagaatctgcata 52058154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 7473862 - 7473935
Alignment:
Q  490 tagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||  ||||||||||||||||||||||||||| | |||| ||||| |||||||  ||||||||||||    
T  7473862 tagattatgtctctgtaatttcatattcttccacttttggtccctcatttcaccacgtcaaaagaatctgcata 7473935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 8293116 - 8293042
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || || |||||| |||||||||||    
T  8293116 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccatgtcagccgaatctgcata 8293042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 20995977 - 20995903
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| |||  ||||||||||||||||||||||||||| | |||  || || |||||||||||||||||||||    
T  20995977 ttagattttgtctctgtaatttcatattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 20995903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 18462593 - 18462519
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| || ||||||||| ||||||||||||||| |  ||| ||||| ||||||| |||||||||||||    
T  18462593 ttagattttgtccccgtaatttcagattcttccacttttggtctctcatttcaccacgtcaacagaatctgcata 18462519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 34749206 - 34749280
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| || ||||||||||||||||||||||||| | |||| || || ||||| |||||||| ||||||    
T  34749206 ttagattttgtccccgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatttgcata 34749280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 39711381 - 39711307
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| || ||||||||||||||||||||||||| | |||| || || ||||| |||||||| ||||||    
T  39711381 ttagattttgtccccgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatttgcata 39711307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 29696867 - 29696794
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcat 562  Q
    ||||||| ||| | |||||||||| ||||||||||||||| | |||| || || ||||| ||||||||||||||    
T  29696867 ttagattttgtccatgtaatttcagattcttccacttttggtccctcattccaccacgtaagcagaatctgcat 29696794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 39970729 - 39970789
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||| ||||||||||||||| | |||| || || |||||||||| ||||||||||    
T  39970729 tgtaatttcagattcttccacttttggtccctcattccaccacgtcagcaaaatctgcata 39970789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 563
Target Start/End: Complemental strand, 13230024 - 13229966
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||| |||||||||||||| | |||| || || ||||| |||||||||||||||    
T  13230024 taatttcatcttcttccacttttggtccctcattccaccacgtaagcagaatctgcata 13229966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 30299540 - 30299466
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||| | ||||||||||||||| | |||| || || ||||| || ||||||||||||    
T  30299540 ttagattttgtccctgtaattttagattcttccacttttggtccctcattccaccacgtaagaagaatctgcata 30299466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 17606315 - 17606360
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt 480  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||||||    
T  17606315 tcttttcgtccctgtaatattagcgaattccgattttagtccctgt 17606360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 14161940 - 14162058
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  14161940 ttagattatgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 14162039  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| | |||||||||||    
T  14162040 cctcctaattttggtccct 14162058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 5800674 - 5800792
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  5800674 ttagattatgtccctgtaatttcatattcttccatttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 5800773  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| | |||||||||||    
T  5800774 cctcctagttttggtccct 5800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 15328464 - 15328647
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttccac 523  Q
    ||||||||  ||||||||||||||||||||  |  ||||||| |||||||||||||         ||||||| ||| ||||||||||||||||||||||     
T  15328464 ggtaaatacctcttttcgttcctgtaatattagtaaatttcgtttttagtccctgtaaaaaaaaattagattttgtccctgtaatttcatattcttccag 15328563  T
Q  524 ttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    |||   | |||| ||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  15328564 tttgtgtccctcttttcatcacgtcaacagaatctgcataaattacgtccctgtaatttcagattcctcccacttttggtccct 15328647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 489 - 594
Target Start/End: Complemental strand, 52552997 - 52552892
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  52552997 ttagattttgtctctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 52552898  T
Q  589 cctccc 594  Q
    ||||||    
T  52552897 cctccc 52552892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 30500350 - 30500234
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |||||||||| || || |||||||| |||    
T  30500350 ttagattttgtccctgtaatttcatattgttccacttttggtccctcctttcatcacgtcagcaaaatctacataaattacatccctgtaatttcagatt 30500251  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  30500250 cctcccacttttggtcc 30500234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 38283619 - 38283735
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| || |||||| | |||    
T  38283619 ttagattttgttcctataatttcatattgttccacttttgatccctcctttcatcacgtcagcagaatctacataagttacgtccctgtaatttaagatt 38283718  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||| ||||    
T  38283719 cctcccactttttgtcc 38283735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 14262345 - 14262227
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||||||||| || |||||| | |||    
T  14262345 ttagattttgtccctgtaatttcatattgttccacttttagtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaattttagatt 14262246  T
Q  589 cctcccacttttggtccct 607  Q
    ||| ||||||||| |||||    
T  14262245 ccttccacttttgatccct 14262227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 43572390 - 43572578
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttc 520  Q
    ||||||||  ||||||||||||||||||||  |||||||||| |||||||||||||            ||||||| ||| |||||||||||| |||||||    
T  43572390 ggtaaatacatcttttcgttcctgtaatattagcgaatttcggttttagtccctgtaaaaagaaaaatttagattttgtccctgtaatttcagattcttc 43572489  T
Q  521 cacttttgattcctcctt---tcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    |||||||| | |||||||   |||||| ||||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||    
T  43572490 cacttttggtccctcctttcatcatcaagtcagcagaatctgca-caattacgtccctgtaatttcatattcctcccacttttggtccct 43572578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 45969984 - 45970102
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| |||||| |||||||| |  |||||||||||| |||| |||||||||||||||||||||| || |||||||| |||    
T  45969984 ttagattttgtccctgtaatttcagattctttcacttttggtctctcctttcatcaagtcaacagaatctgcataaattacgtccctgtaatttcagatt 45970083  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  45970084 cctcccacttttggtccct 45970102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 501 - 605
Target Start/End: Original strand, 21632977 - 21633081
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| |||||| |||||||| | ||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||||||||||||||    
T  21632977 cctgtaatttcagattctttcacttttggtccctcctttcatcaagtcaacagaatctgcataaattacgtccctgtaatttcagattcctcccactttt 21633076  T
Q  601 ggtcc 605  Q
    |||||    
T  21633077 ggtcc 21633081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 607
Target Start/End: Complemental strand, 19113062 - 19112956
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| ||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  19113062 cctgtaatttcagattcttctacttttggtccctcctttcatcaagtcaacagaatctgcataaattacgtccttgtaatttcagattcctcccactttt 19112963  T
Q  601 ggtccct 607  Q
    |||||||    
T  19112962 ggtccct 19112956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 45003565 - 45003683
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||  | |||||||||||||||||| ||||||||| ||||||||||||  | |||||||| |||    
T  45003565 ttagattttgtccctgtaatttcagattcttccactttttgtccctcctttcatcacgtcaacagaatctgtataaattacgtccttgtaatttcagatt 45003664  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  45003665 cctcccacttttgttccct 45003683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 20854005 - 20853890
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||| |||| || ||||||||||||||| ||| || |||||||| |||    
T  20854005 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcaagtcaacataatctgcataaattatgtcactgtaatttcagatt 20853906  T
Q  589 cctcccacttttggtc 604  Q
    |||||||||| |||||    
T  20853905 cctcccacttctggtc 20853890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 489 - 604
Target Start/End: Original strand, 33372475 - 33372590
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||| ||||||||||| | ||||||||||||||||||||| ||||||||| ||||| |||  | |||||||| |||    
T  33372475 ttagattttgtccctgtaatttcagattattccacttttggtccctcctttcatcacgtcagcaaaatctgcatcaattaagtccttgtaatttcagatt 33372574  T
Q  589 cctcccacttttggtc 604  Q
    ||||||||||||||||    
T  33372575 cctcccacttttggtc 33372590  T

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Target: chr3; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 14171895 - 14171777
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||  ||||||||||||||| | | ||||||||||||||||||| ||||||||| ||||||| |  | |||||||| |||    
T  14171895 ttagattttgtccctgtaatttctgattcttccacttttggtccttcctttcatcacgtcagcaaaatctgcatcaattacgaccttgtaatttcagatt 14171796  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  14171795 cctcccacttttggtccct 14171777  T

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Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 16722060 - 16722178
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| ||||||||||||||| | ||| ||||||||| |||| |||||||||||||||||| ||| || |||||||| |||    
T  16722060 ttagattttgtccatgtaatttcagattcttccacttttggtcccttctttcatcaagtcaacagaatctgcataaattatgtcactgtaatttcagatt 16722159  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||| ||||||||    
T  16722160 cctcccacttctggtccct 16722178  T

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Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 605
Target Start/End: Complemental strand, 9267351 - 9267168
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnntt---agattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| | ||||||||  ||||||| ||||||||||||||||        ||   ||||| ||| |||||||| ||| |||||||     
T  9267351 ggtaaatacctcttttcgtccttgtaatattagcgaattccgattttagtccctgtatataaattttttagattttgtccctgtaatatcagattcttct 9267252  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    ||||||| | ||||||||||||| |||| |||||||||||||||||| |||  | |||||||| ||||||||||||||||||||    
T  9267251 acttttggtccctcctttcatcaagtcaacagaatctgcataaattaagtccttgtaatttcagattcctcccacttttggtcc 9267168  T

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Target: chr3; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 11003801 - 11003919
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| ||||||||||||||| | | ||||||||||| |||| || ||| ||||| ||||||||| || |||||||| |||    
T  11003801 ttagattttgtccttgtaatttcagattcttccacttttggtccatcctttcatcaagtcaacaaaatatgcatcaattacgtccctgtaatttcagatt 11003900  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  11003901 cctcccacttttggtccct 11003919  T

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Target: chr3; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 507 - 604
Target Start/End: Complemental strand, 4204999 - 4204902
Alignment:
Q  507 atttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||| ||  |||||||||| |||||||||||| ||||||    
T  4204999 atttcagattcttccacttttgatccctctttttatcacgtcagtagaatctgcataaattacatccatataatttcagattcctcccactattggtc 4204902  T

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Target: chr3; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 17465664 - 17465560
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    ||||||| || | |||||| |||||||| | |||||||||||||||||| || ||| | |||||||||||||||| |||||||| |||||||||||||||    
T  17465664 cctgtaactttagattctttcacttttggtccctcctttcatcacgtcaacaaaatttacataaattacgtctctgtaatttcagattcctcccactttt 17465565  T
Q  601 ggtcc 605  Q
    |||||    
T  17465564 ggtcc 17465560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 425 - 607
Target Start/End: Complemental strand, 35996052 - 35995869
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttccac 523  Q
    ||||||||  ||||||||| ||||||||||  ||||||| ||||||||||||||||         ||||| | |||  | ||||||||| ||||||||||    
T  35996052 ggtaaatacatcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaaaattagaatttgtctcagtaatttcagattcttccac 35995953  T
Q  524 ttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    ||||| | ||| ||||||||||||| |||||||||||||||||||||||  | ||  || | ||||||||||||||| ||||||    
T  35995952 ttttggtcccttctttcatcacgtccgcagaatctgcataaattacgtccttgtatatttagattcctcccactttttgtccct 35995869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 47575581 - 47575463
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||||| ||| ||| ||||||| |  ||||||||||||||||||||||||||||||||||||  || || |||||||| |||    
T  47575581 ttagattttgtctctgtaatttcagatttttcaacttttggtctctcctttcatcacgtcagcagaatctgcataaattatatccctgtaatttcaaatt 47575482  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||| |||| ||||||    
T  47575481 cctcccattttttgtccct 47575463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 4204777 - 4204851
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| |||||||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||||||    
T  4204777 ttagattatgtccctgtaatttcagattcttccacttttggtccctcatttcaccacgtcagcagaatctgcata 4204851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 49986597 - 49986715
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| |  ||||||||||||  | |  |||||||||||||||||||||  | |||||||| |||    
T  49986597 ttagattttgtccctgtaatttcagattcttctacttttggtctctcctttcatcaatttaatagaatctgcataaattacgtccttgtaatttcagatt 49986696  T
Q  589 cctcccacttttggtccct 607  Q
    |||| ||||||||||||||    
T  49986697 cctctcacttttggtccct 49986715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 14171655 - 14171729
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| |||| || || |||||||||||||||||||||    
T  14171655 ttagattttgtccctgtaatttcaaattcttccacttttgatccctcattccaccacgtcagcagaatctgcata 14171729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 38283859 - 38283785
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| ||| |||||||| ||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  38283859 ttagattttgtccctataatttcagattcttccacttttgatcccttatttcatcacgtcagcagaatctgcata 38283785  T

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Target: chr3; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 43572700 - 43572623
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaat 566  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||| |||||    
T  43572700 ttagattctgtccctgtaatttcagattcttccacttttggtccctcatttcaccacgtcagcagaatctgcgtaaat 43572623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 584
Target Start/End: Complemental strand, 17649319 - 17649224
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttca 584  Q
    ||||||| ||| |||||||||||| ||| |||||| |||| |  ||||||| |||| |||| |||||||||||||||||||||| || ||||||||    
T  17649319 ttagattttgtccctgtaatttcagattattccacatttggtctctccttttatcaagtcaacagaatctgcataaattacgtccctgtaatttca 17649224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 563
Target Start/End: Original strand, 30500054 - 30500184
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn--ttagattatgttcctgtaatttcatattcttccacttttgattc 532  Q
    ||||||| | ||||||||||  |||||||||| |||||||||||||          ||||||| ||| |||||||||||||||||||||||||||| | |    
T  30500054 tcttttcatccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaatttagattttgtccctgtaatttcatattcttccacttttggtcc 30500153  T
Q  533 ctcctttcatcacgtcagcagaatctgcata 563  Q
    ||  || || |||||||||||||||||||||    
T  30500154 cttattccaccacgtcagcagaatctgcata 30500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 9267044 - 9267118
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  9267044 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccagcacgtaagcagaatctgcata 9267118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 35995679 - 35995821
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnntt----agattatgttcctgtaatttcatattcttc 520  Q
    ||||||||  ||||||||||||||||||||  ||||||| || |||||||||||||        ||    ||||| ||| |||||||||||| |||||||    
T  35995679 ggtaaatacctcttttcgttcctgtaatattagcgaattccggttttagtccctgtagaattttttttttagattttgtccctgtaatttcagattcttc 35995778  T
Q  521 cacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||| | |||| || || ||||| |||||||||||||||    
T  35995779 cacttttggtccctcattccaccacgtaagcagaatctgcata 35995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 33372713 - 33372640
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||| | || || |||||||||||||||||||||    
T  33372713 ttagattttgtccctgtaatttcagattcttccacttttga-tccccattccaccacgtcagcagaatctgcata 33372640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 52552761 - 52552835
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| |||  || || || ||||||||||||||||||    
T  52552761 ttagattttgtccctgtaatttcagattcttccacttttgatcccttattccaccatgtcagcagaatctgcata 52552835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 49986823 - 49986763
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  49986823 tgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 49986763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 563
Target Start/End: Complemental strand, 45003872 - 45003731
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||| || |||||| ||||||||||  |||||||||| ||||||| |||||           |||||||  || ||| |||||||||||||||||    
T  45003872 ggtaaatatatcgtttcgtccctgtaatattagcgaatttcggttttagttcctgtaaaaaaaagatttagatttagtccctataatttcatattcttcc 45003773  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| | |||| || || ||||| |||||||||||||||    
T  45003772 acttttggtccctcattccaccacgtaagcagaatctgcata 45003731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 14262105 - 14262179
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||  || || ||| |||||||||||||||||    
T  14262105 ttagattttgtccctgtaatttcagattcttccacttttggtcccttattccaccacatcagcagaatctgcata 14262179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 15328769 - 15328695
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||| ||||||||||| | |||  || || |||||||||||||||||||||    
T  15328769 ttagattttgtccctgtaatttcagatttttccacttttggtcccttattccaccacgtcagcagaatctgcata 15328695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 16722300 - 16722226
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||  || || || || |||||||||||||||    
T  16722300 ttagattttgtccctgtaatttcatattcttccacttttggtcccttattccaccatgtaagcagaatctgcata 16722226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 19112834 - 19112908
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||| ||||||||||||||||||||||| | |||  || || ||||| |||||||||||||||    
T  19112834 ttagattttgtccctggaatttcatattcttccacttttggtcccttattccaccacgtaagcagaatctgcata 19112908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 20853765 - 20853839
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| ||| |||||||||||||||||||||||| | |||| || || ||||| || ||||||||||||    
T  20853765 ttagattttgtccctataatttcatattcttccacttttggtccctcattccaccacgtaagtagaatctgcata 20853839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 21633205 - 21633131
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| || || ||||| || ||||||||||||    
T  21633205 ttagattttgtccctgtaatttcagattcttccacttttggtccctcattccaccacgtaagaagaatctgcata 21633131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 563
Target Start/End: Original strand, 17465448 - 17465511
Alignment:
Q  500 tcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||||| ||||||||| |||||||  ||| || || ||||| |||||||||||||||    
T  17465448 tcctgtaatttcagattcttccatttttgatctctcattccaccacgtaagcagaatctgcata 17465511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 19720334 - 19720389
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt 480  Q
    ||||||||| ||||||||| ||||||||||  ||||||| || |||||||||||||    
T  19720334 ggtaaatatctcttttcgtccctgtaatattagcgaattccggttttagtccctgt 19720389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 45970212 - 45970150
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||| ||||||||||||||| |||| | || || ||||| ||||||||| |||||    
T  45970212 cctgtaatttcagattcttccacttttggttccccattccaccacgtaagcagaatccgcata 45970150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 27946120 - 27946165
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt 480  Q
    ||||||||| ||||||||||  |||||||||| |||||||||||||    
T  27946120 tcttttcgtccctgtaatattagcgaatttcggttttagtccctgt 27946165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 52552681 - 52552746
Alignment:
Q  415 ttgttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt 480  Q
    ||||||| ||||| ||||| ||||||||| ||| ||||||  || |||||||||||||||| ||||    
T  52552681 ttgtttttaaggttaatatctcttttcgtccctctaatattagcaaatttcgattttagtctctgt 52552746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 413 - 609
Target Start/End: Complemental strand, 42113370 - 42113173
Alignment:
Q  413 aattgttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttc 511  Q
    |||| |||||| ||||||||  ||||||||| ||||||||||   ||||||||| ||||||| |||||         ||||||||||| ||| |||||||    
T  42113370 aattcttttaagggtaaatacatcttttcgtccctgtaatattaacgaatttcggttttagttcctgtaaaaaaaaattagattatgtccctttaatttc 42113271  T
Q  512 atattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccctat 609  Q
    | ||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  42113270 aaattcttccacttttgatccctcctttcatcatgtcagcaaattctgcataaattatgtccctgtaatttcatattcctcccacttttggtccctat 42113173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 10108439 - 10108557
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  | |||||||| |||    
T  10108439 ttagattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccttgtaatttcagatt 10108538  T
Q  589 cctcccacttttggtccct 607  Q
    | |||||||||||||||||    
T  10108539 cgtcccacttttggtccct 10108557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 2583389 - 2583507
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  2583389 ttagattttgtccctgtaatttcggattcttctacttttgatccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 2583488  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| |||||||||||||    
T  2583489 cctcctacttttggtccct 2583507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 21148245 - 21148129
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||    
T  21148245 ttagattttgtccttgtaatttcatattcttccacttttagtccctcctttcatcatgtcagcagaatctgcataaattacgtccctgtaatttcagatt 21148146  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  21148145 cctcccacttttggtcc 21148129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 607
Target Start/End: Complemental strand, 14767881 - 14767698
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttccac 523  Q
    ||||||||  ||||||||||||||||||||  |  ||||||| |||||||||||||         ||||||| ||| ||||||||||||||||||||||     
T  14767881 ggtaaatacctcttttcgttcctgtaatattagtaaatttcgtttttagtccctgtaaaaaaaaattagattttgtccctgtaatttcatattcttccag 14767782  T
Q  524 ttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    |||   | |||| ||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||    
T  14767781 tttgtgtccctcttttcatcacgtcaacagaatctgcataaattacgtccctgtaatttcagattcctcccacttttggtccct 14767698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 17623196 - 17623078
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||| || |||||||| |||    
T  17623196 ttagattttgtccttgtaatttcaaattcttccacttttggtcactcctttcatcacgtcagcagaatctgcataaattatgtccctgtaatttcaaatt 17623097  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  17623096 cctcccacttttggtccct 17623078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 26136754 - 26136870
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||    
T  26136754 ttagattttgtccttgtaatttcagattcttccaattttgattcctcctttcatcaagtcagcataatctgcataaattacgtccctgtaatttcagatt 26136853  T
Q  589 cctcccacttttggtcc 605  Q
     ||||||||||||||||    
T  26136854 tctcccacttttggtcc 26136870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 460 - 606
Target Start/End: Original strand, 22494425 - 22494570
Alignment:
Q  460 aatttcgattttagtccctgtnnnnnnnnttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctg 559  Q
    ||||||| |||||||||||||        ||||||| |||||||||||||||||||||||||| ||||| | ||| |||| |||||||||||||||||||    
T  22494425 aatttcggttttagtccctgtaaaaaaaattagattttgttcctgtaatttcatattcttccatttttggt-ccttctttaatcacgtcagcagaatctg 22494523  T
Q  560 cataaattacgtctctataatttcatattcctcccacttttggtccc 606  Q
    ||||||||||||| || |||||| | |||||||| ||||||||||||    
T  22494524 cataaattacgtccctgtaattttagattcctcctacttttggtccc 22494570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 489 - 606
Target Start/End: Original strand, 14820363 - 14820480
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| || |||||||| |||    
T  14820363 ttagattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacatcagcagaatctgcataaattacgtccctgtaatttcagatt 14820462  T
Q  589 cctcccacttttggtccc 606  Q
     |||| | ||||| ||||    
T  14820463 tctcctagttttgctccc 14820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 491 - 607
Target Start/End: Original strand, 5554940 - 5555056
Alignment:
Q  491 agattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcc 590  Q
    ||||| ||| ||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||    
T  5554940 agattttgtccctataatttcatattcttccacttttggtcccttctttcatcacgtcagcagaatctgcataaattacgtccctggaatttcagattcc 5555039  T
Q  591 tcccacttttggtccct 607  Q
    ||| | |||||||||||    
T  5555040 tcctagttttggtccct 5555056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 30789816 - 30789700
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | | || |||||||||||||||| ||||||||| |||||||||  | ||||||||||||    
T  30789816 ttagattttgtccctgtaatttcagattcttccacttttggtccatcgtttcatcacgtcagcaaaatctgcatcaattacgtccttgtaatttcatatt 30789717  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  30789716 cctcccacttttggtcc 30789700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 501 - 604
Target Start/End: Original strand, 42605834 - 42605937
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||||||||||||||||||| | |||||||| |||||||||| ||||| ||||||||||||||| || |||||||| ||||||||| |||||    
T  42605834 cctgtaatttcatattcttccacttttggtccctcctttaatcacgtcagtagaatatgcataaattacgtccctgtaatttcaaattcctcccgctttt 42605933  T
Q  601 ggtc 604  Q
    ||||    
T  42605934 ggtc 42605937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 43851948 - 43851855
Alignment:
Q  514 attcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    ||||||||||||||  | ||||||||||||||||||||| ||| ||||| |||||||||  | |||||||| ||||||||||||||||||||||    
T  43851948 attcttccactttttgtccctcctttcatcacgtcagcaaaatttgcatcaattacgtccttgtaatttcagattcctcccacttttggtccct 43851855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 503 - 607
Target Start/End: Original strand, 7689606 - 7689710
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttgg 602  Q
    |||||||||| ||||||||||||||| | |||| ||||||||| || ||| ||||||||| |||||||||  | |||||||| ||||||||||||||| |    
T  7689606 tgtaatttcagattcttccacttttggtccctcttttcatcacatcggcaaaatctgcatcaattacgtccttgtaatttcagattcctcccacttttag 7689705  T
Q  603 tccct 607  Q
    |||||    
T  7689706 tccct 7689710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 435 - 563
Target Start/End: Original strand, 42112996 - 42113127
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttccacttttgatt 531  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||||||           ||||||||||| |||||||||| | |||||| |||||||| |     
T  42112996 tcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaaagatttagattatgtccctgtaatttaagattctttcacttttggtc 42113095  T
Q  532 cctcctttcatcacgtcagcagaatctgcata 563  Q
    |||| ||||| |||||||||||||||||||||    
T  42113096 cctcatttcaccacgtcagcagaatctgcata 42113127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 593
Target Start/End: Complemental strand, 43481611 - 43481519
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcc 593  Q
    |||||||||||| ||||||||||| ||| |   |||||| |||||||||||| |||||||||||||||||||  | |||||||| ||||||||    
T  43481611 cctgtaatttcaaattcttccactcttggtctttcctttaatcacgtcagcacaatctgcataaattacgtccttgtaatttcagattcctcc 43481519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 43851666 - 43851807
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| || |||||||||||||           ||||||| ||| |||||||||||| ||||||||    
T  43851666 ggtaaatacctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaacaaaagatttagattttgtccctgtaatttcagattcttcc 43851765  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||| |||| || || ||| |||||||||||||||||    
T  43851766 acttttgatccctcattccaccacatcagcagaatctgcata 43851807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 7689820 - 7689758
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||| ||||||||||||||||| |||| || || |||||||||||||||||||||    
T  7689820 cctgtaatttcagattcttccacttttgatccctcattccaccacgtcagcagaatctgcata 7689758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 10108679 - 10108605
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||  || || |||||||||||||||||||||    
T  10108679 ttagattttgtccctgtaatttcatattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 10108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 14820603 - 14820529
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||  || || |||||||||||||||||||||    
T  14820603 ttagattttgtccctgtaatttcatattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 14820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 26532852 - 26532926
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||| ||||||||||||| |||| || || |||||||||||||||||||||    
T  26532852 ttagattttgtccctgtaatttcaaatttttccacttttgatccctcattccaccacgtcagcagaatctgcata 26532926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 563
Target Start/End: Original strand, 30789513 - 30789650
Alignment:
Q  429 aatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttccactt 525  Q
    ||||| ||||||||| ||||||||||  ||||||| ||||||||||||||||           ||||||| |||  ||||||||||| |||| |||||||    
T  30789513 aatatgtcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaaagatttagattttgtctctgtaatttcagattcctccactt 30789612  T
Q  526 ttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||| |||| ||||| ||||| |||| ||||||||||    
T  30789613 ttgatccctcatttcaccacgttagcaaaatctgcata 30789650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 21148006 - 21148080
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||  || || |||||||||||||||||||||    
T  21148006 ttagattttgtccctgtaatttcagattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 21148080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 26136994 - 26136920
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  26136994 ttagattttgtccctgtaatttcagattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 26136920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 566
Target Start/End: Complemental strand, 5555178 - 5555101
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaat 566  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||  || || || ||||||| |||||||||||||    
T  5555178 ttagattttgtccctgtaatttcatattcttccacttttggtcccttattccaccatgtcagcaaaatctgcataaat 5555101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 14767576 - 14767650
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||| ||||||||||| | |||  || || |||||||||||||||||||||    
T  14767576 ttagattttgtccctgtaatttcagatttttccacttttggtcccttattccaccacgtcagcagaatctgcata 14767650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 582
Target Start/End: Complemental strand, 21144814 - 21144721
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataattt 582  Q
    ||||||| ||| | |||||||||| |||| |||| ||||  | |||  ||| | |||||||||||||||||||||||||||||| || ||||||    
T  21144814 ttagattttgtccttgtaatttcagattcctccatttttcgtcccttatttaaccacgtcagcagaatctgcataaattacgtccctgtaattt 21144721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 560
Target Start/End: Original strand, 17622957 - 17623027
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgc 560  Q
    ||||||| ||||| |||||||| | ||||||||||||||| | |||| || || ||||||||||||||||||    
T  17622957 ttagattttgttc-tgtaattttagattcttccacttttggtccctcattccaccacgtcagcagaatctgc 17623027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 35368719 - 35368652
Alignment:
Q  493 attatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgc 560  Q
    ||||||| |||||||||||| |||| | |||||||||||||||  || |||  |||||||||||||||    
T  35368719 attatgtccctgtaatttcagattccttcacttttgattcctcgcttgatcttgtcagcagaatctgc 35368652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 563
Target Start/End: Complemental strand, 2583613 - 2583555
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||| ||||||||||||||| |||||| || || ||| ||||| |||||||||||    
T  2583613 taatttcagattcttccacttttggttcctcattccaccacatcagccgaatctgcata 2583555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 22494681 - 22494619
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||| ||||||||||||||| | |||| || || ||||| |||||||| ||||||    
T  22494681 cctgtaatttcaaattcttccacttttggtccctcattccaccacgtaagcagaatttgcata 22494619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 2583321 - 2583370
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagt 474  Q
    ||||||||  ||||||| ||||||||||||  ||||||||||||||||||    
T  2583321 ggtaaatacctcttttcattcctgtaatattagcgaatttcgattttagt 2583370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 10171452 - 10171383
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatct 558  Q
    ||||||| ||| |||||||||| | |||||| |||||||| | |||| || ||||| |||||||||||||    
T  10171452 ttagattttgtccctgtaattttagattctttcacttttggtccctcattccatcatgtcagcagaatct 10171383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 489 - 609
Target Start/End: Original strand, 3018081 - 3018201
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |  | |||||||| |||    
T  3018081 ttagattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacggccttgtaatttcacatt 3018180  T
Q  589 cctcccacttttggtccctat 609  Q
    |||||||||||||||||||||    
T  3018181 cctcccacttttggtccctat 3018201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 26252337 - 26252455
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||    
T  26252337 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcaagtcaacagaatctgcataaattacgtccctgtaatttcagatt 26252436  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  26252437 cctcccacttttggtccct 26252455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 46046733 - 46046615
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||  | |||||||| |||    
T  46046733 ttagattttgtccctgtaatttcagattcttccacttttgatccctcctttcatcacgtcagcaaaatctgcatcaattacgtccttgtaatttcagatt 46046634  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  46046633 cctcccacttttggtccct 46046615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 425 - 605
Target Start/End: Original strand, 3273622 - 3273807
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnntt-----agattatgttcctgtaatttcatattctt 519  Q
    ||||||||| ||||||||| ||||||||||  ||||||| ||||||||||||| ||        ||     ||||| ||| |||||||||||||||||||    
T  3273622 ggtaaatatctcttttcgtccctgtaatattagcgaattccgattttagtccccgtaatttttttttttatagattttgtccctgtaatttcatattctt 3273721  T
Q  520 ccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    ||||||||| | ||||||||||||| ||||  |||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  3273722 ccacttttggtccctcctttcatcaagtcattagaatctgcataaattacgtccttgtaatttcatattcctcccacttttggtcc 3273807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 37013016 - 37012900
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  |||||||||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  37013016 ttagattttgtccctgtaatttcatattcttccacttttggtcactcctttcatcacgtcagcaaaatctgcataaattacgtccctgtaatttcatatt 37012917  T
Q  589 cctcccacttttggtcc 605  Q
    | ||| |||||||||||    
T  37012916 cttcctacttttggtcc 37012900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 435 - 607
Target Start/End: Original strand, 9396710 - 9396886
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttccacttttgat 530  Q
    ||||||||| ||||||||||  ||||||||||||||||||| ||||            ||||||| ||| ||| |||||||| ||| ||||||||||| |    
T  9396710 tcttttcgtccctgtaatattagcgaatttcgattttagtctctgttaaaaaaaagatttagattttgtccctataatttcaaatttttccacttttggt 9396809  T
Q  531 tcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
     ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||    
T  9396810 ccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagattcctcccacttttgatccct 9396886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 13132250 - 13132134
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | ||| |||||||||  ||||||||||||||||||||||||||  | ||||||||||||    
T  13132250 ttagattctgtccctgtaatttcatattcttccacttttggtcccttctttcatcaaatcagcagaatctgcataaattacgtccttgtaatttcatatt 13132151  T
Q  589 cctcccacttttggtcc 605  Q
     ||||||||||||||||    
T  13132150 tctcccacttttggtcc 13132134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 601
Target Start/End: Original strand, 15640784 - 15640896
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||||||||||||||||||| |||||||| | |||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||    
T  15640784 ttagattttgtccctgtaatttcatattctttcacttttggtccctcctttcatcacatcagcagaatatgcataaattacgtccctgtaatttcagatt 15640883  T
Q  589 cctcccacttttg 601  Q
    |||||||||||||    
T  15640884 cctcccacttttg 15640896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 18713029 - 18713145
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||    
T  18713029 ttagattttgtccctgtaatttcatattgttccaattttggtccctcctttcatcacgtcagcaaaatctgcataaattacgtccctgtaatttcagatt 18713128  T
Q  589 cctcccacttttggtcc 605  Q
    |||||| ||||||||||    
T  18713129 cctccctcttttggtcc 18713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 38574277 - 38574162
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||| |||| |||| || |||||||| |||    
T  38574277 ttagattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcaacaaaatctgcatcaattgcgtccctgtaatttcagatt 38574178  T
Q  589 cctcccacttttggtc 604  Q
    ||||||||||||||||    
T  38574177 cctcccacttttggtc 38574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 9619049 - 9619166
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||| |||| ||||||||||||||| |||||| || ||||||||||||    
T  9619049 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcaagtcaacagaatctgcataaa-tacgtccctgtaatttcatatt 9619147  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||| |||||||||||    
T  9619148 cctcccatttttggtccct 9619166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 34064291 - 34064173
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||  | |||||||| |||    
T  34064291 ttagattttgtctctgtaatttcagattcttccacttttggtcccttctttcatcacgtcagcagaatctgcataaattacgtccttgtaatttcagatt 34064192  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| |||||||||||||    
T  34064191 cctcctacttttggtccct 34064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 7819083 - 7819199
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||| || | ||||||||| |||||||||  | |||||||| |||    
T  7819083 ttagattttgtccctgtaatttcagattcttccacttttggttcctcctttcatcacgttagtaaaatctgcatcaattacgtccatgtaatttcagatt 7819182  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  7819183 cctcccacttttggtcc 7819199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 606
Target Start/End: Complemental strand, 31090438 - 31090253
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttc 520  Q
    ||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||            ||||||| ||| |||||||||||| |||||||    
T  31090438 ggtaaatatctcttttcgtccctgtaatattagcgaatttcgattttagtccctgtaaaaaaaaaaaattagattttgtccctgtaatttcagattcttc 31090339  T
Q  521 cacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccc 606  Q
     ||||||| | ||||||||||||| ||||  ||||||| |||||||||||||  | |||||||| ||| |||||||||||||||||    
T  31090338 tacttttggtccctcctttcatcaagtcaatagaatctacataaattacgtccttgtaatttcagatttctcccacttttggtccc 31090253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 48580175 - 48580060
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||||||||| | |||||||||||||| | |||||||| |||||||||||||||  | |||||||| |||    
T  48580175 ttagattttgtccctgtaatttcatattgttccacttttggtccctcctttcatcaccttagcagaatatgcataaattacgtccttgtaatttcaaatt 48580076  T
Q  589 cctcccacttttggtc 604  Q
    ||||||||||||||||    
T  48580075 cctcccacttttggtc 48580060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 425 - 607
Target Start/End: Complemental strand, 9516987 - 9516801
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttc 520  Q
    ||||||||| ||||||||| ||||||||||  |||||||||| |||||||| ||||            ||||||| ||| |||||||||||| |||||||    
T  9516987 ggtaaatatctcttttcgtccctgtaatattagcgaatttcggttttagtctctgtaaaaaaaaagatttagattttgtccctgtaatttcagattcttc 9516888  T
Q  521 cacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
     ||||||| | ||||||||||||| |||| || ||||| |||||||||||||  | |||||||| ||||||||||||||||||||||    
T  9516887 tacttttggtccctcctttcatcaagtcaacaaaatctacataaattacgtccttgtaatttcagattcctcccacttttggtccct 9516801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 506 - 607
Target Start/End: Original strand, 18667375 - 18667476
Alignment:
Q  506 aatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    ||||||||||| ||||||||||| | |||||||||||||||||| || ||||||||||||||||||| || |||||||| |||||||| |||||||||||    
T  18667375 aatttcatattgttccacttttggtccctcctttcatcacgtcaacaaaatctgcataaattacgtccctgtaatttcagattcctccaacttttggtcc 18667474  T
Q  606 ct 607  Q
    ||    
T  18667475 ct 18667476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 503 - 605
Target Start/End: Original strand, 4355964 - 4356066
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttgg 602  Q
    ||||||||||||||||| |||||||| | |||| ||||||||||| ||||||||||||||||||||||||  | |||||||| |||||||| ||||||||    
T  4355964 tgtaatttcatattctttcacttttggtccctcatttcatcacgttagcagaatctgcataaattacgtccttgtaatttcagattcctcctacttttgg 4356063  T
Q  603 tcc 605  Q
    |||    
T  4356064 tcc 4356066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 31944019 - 31944135
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  ||||||||||||||||| || || |||||| ||||| |||  | |||||||| |||    
T  31944019 ttagattttgtccctgtaatttcatattcttccacttttggtctctcctttcatcacgtcaacaaaacctgcatcaattatgtccatgtaatttcagatt 31944118  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  31944119 cctcccacttttggtcc 31944135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 13132010 - 13132084
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  13132010 ttagattatgttcatgtaatttcagattcttccacttttgatccctcatttcaccacgtcagcagaatctgcata 13132084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 15641024 - 15640950
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  15641024 ttagattatgtccctgtaatttcagattcttccacttttggttcctcatttcaccacgtcagcagaatatgcata 15640950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 425 - 584
Target Start/End: Complemental strand, 41947231 - 41947070
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn--ttagattatgttcctgtaatttcatattcttcca 522  Q
    ||||||||| ||||||||| ||||||||||  |||||||||| ||||||||| | |          ||||||| ||| | |||||||||||||| |||||    
T  41947231 ggtaaatatctcttttcgtccctgtaatattagcgaatttcggttttagtccttttaaaaaaaaaattagattttgtccttgtaatttcatatttttcca 41947132  T
Q  523 cttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttca 584  Q
    |||||| | ||| ||||||| | |||| |||||||||||||||||||||| || ||||||||    
T  41947131 cttttggtccctgctttcataaagtcaacagaatctgcataaattacgtccctgtaatttca 41947070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 35376231 - 35376346
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||| | ||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| |||  | |||   || |||    
T  35376231 ttagattttgtctctgtaattttagattcttccacttttggtctctcctttcatcacgtcagcagaatccgcataaattaagtccatgtaa---cagatt 35376327  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  35376328 cctcccacttttggtccct 35376346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 38574037 - 38574111
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || |||||||||||||||||||||    
T  38574037 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtcagcagaatctgcata 38574111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 563
Target Start/End: Original strand, 46046443 - 46046567
Alignment:
Q  437 ttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnnttagattatgttcctgtaatttcatattcttccacttttgattcctcc 536  Q
    ||||||| ||||||||||  ||||||| ||||||||||||||||         |||||| ||| |||||||||||||||||||||||||||||| ||||     
T  46046443 ttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaa--tagattttgtccctgtaatttcatattcttccacttttgatccctca 46046540  T
Q  537 tttcatcacgtcagcagaatctgcata 563  Q
    || || ||||| || ||||||||||||    
T  46046541 ttccaccacgttagtagaatctgcata 46046567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 3273917 - 3273855
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||| ||||||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  3273917 cctgtaatttcagattcttccacttttgatccctcatttcaccacgtcagtagaatctgcata 3273855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 48260060 - 48259986
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| |||||||||||||||||  ||| || ||||||||||||| ||||||||||    
T  48260060 ttagattttgtccctgtaatttcaaattcttccacttttgatcgctcattccatcacgtcagcataatctgcata 48259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 31090061 - 31090204
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-----ttagattatgttcctgtaatttcatattctt 519  Q
    |||||||| ||||||| || ||||||||||  | ||||||||||||||||||||||             ||||||| ||| |||||||||||||||||||    
T  31090061 ggtaaatacttctttttgtccctgtaatattagtgaatttcgattttagtccctgtaaaaaaaaaagatttagattttgtccctgtaatttcatattctt 31090160  T
Q  520 ccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||| | |||| || || ||||| |||||||| ||||||    
T  31090161 ccacttttggtccctcattccaccacgtaagcagaatttgcata 31090204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 9516679 - 9516753
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  9516679 ttagattttgtccttgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 9516753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 37012776 - 37012850
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||  || || |||||||||||||||||||||    
T  37012776 ttagattttgtccctgtaatttcagattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 37012850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 563
Target Start/End: Complemental strand, 7819322 - 7819249
Alignment:
Q  490 tagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||| ||| |||||||| ||| ||||||||||||||| | |||| || || |||||||||||||||||||||    
T  7819322 tagattttgtccctgtaatgtcagattcttccacttttggtccctcattccaccacgtcagcagaatctgcata 7819249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 563
Target Start/End: Complemental strand, 9397075 - 9396934
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    |||||||| |||||||||| ||||||||||  || |||| || |||||||||||||           ||||||| ||| |||||||||||| ||||||||    
T  9397075 ggtaaatacttcttttcgtccctgtaatattagcaaattccggttttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcagattcttcc 9396976  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||   | || || || |||||||||||||||||||||    
T  9396975 acttttggaccatcattccaacacgtcagcagaatctgcata 9396934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 26252546 - 26252472
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | || | || ||  |||| |||||||||||||||    
T  26252546 ttagattttgtccctgtaatttcatattcttccacttttggtcccccattccactacgtaagcagaatctgcata 26252472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 31944259 - 31944185
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||  | |||| || || ||||||| |||||||||||||    
T  31944259 ttagattttgtccatgtaatttcatattcttccactttttgtccctcattccaccacgtcaacagaatctgcata 31944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 4356177 - 4356116
Alignment:
Q  502 ctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| ||||||||||||||| | |||  || || |||||||||||||||||||||    
T  4356177 ctgtaatttcaaattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 4356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 559
Target Start/End: Complemental strand, 9619288 - 9619218
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctg 559  Q
    ||||||| ||| | |||||||||||||||||||||||||| | | || || || ||||| |||||||||||    
T  9619288 ttagattttgtccttgtaatttcatattcttccacttttggtccttcattccaccacgtaagcagaatctg 9619218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 561
Target Start/End: Complemental strand, 36888989 - 36888917
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgca 561  Q
    ||||||||||| |||||||||||| |||| |||||||||  | |||| ||| | |  ||||||||||||||||    
T  36888989 ttagattatgtccctgtaatttcagattcctccacttttagtccctcgtttaaccttgtcagcagaatctgca 36888917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 6465923 - 6466041
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||| || |||||||| |||    
T  6465923 ttagattatgttcttgtaatttcagattcttccacttttggtccctcctttcatcacgtcagaagaatctgcataaattatgtccctgtaatttcaaatt 6466022  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  6466023 cctcccacttttgatccct 6466041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 489 - 609
Target Start/End: Complemental strand, 38880033 - 38879913
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||||| || |||| |||||||||||||||||||||| || ||||||||||||    
T  38880033 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcaccaagtcaacagaatctgcataaattacgtccctgtaatttcatatt 38879934  T
Q  589 cctcccacttttggtccctat 609  Q
    |||||||||||||||| ||||    
T  38879933 cctcccacttttggtctctat 38879913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 425 - 604
Target Start/End: Complemental strand, 12006917 - 12006734
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttc 520  Q
    ||||||||  ||||||||||| ||||||||  ||||||| ||||||||||||||||            ||||||| ||| |||||||||||| |||||||    
T  12006917 ggtaaatacctcttttcgttcatgtaatattagcgaattccgattttagtccctgtaaataaaaagatttagattttgtccctgtaatttcagattcttc 12006818  T
Q  521 cacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    |||||||| | ||||||||||||||||||||| ||||||||| |||||||||  | |||||||| |||||||||||||||||||    
T  12006817 cacttttggtccctcctttcatcacgtcagcaaaatctgcatcaattacgtccttgtaatttcagattcctcccacttttggtc 12006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 28218472 - 28218354
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||||||||||||||||| || ||||||||| ||||||||| || |||||||| |||    
T  28218472 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcacgtcaacaaaatctgcatcaattacgtccctgtaatttcagatt 28218373  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  28218372 cctcccacttttggtccct 28218354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 41600267 - 41600149
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||||  | |||||||| |||    
T  41600267 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcacgtcagcaaaatctgcatcaattacgtccttgtaatttcagatt 41600168  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  41600167 cctcccacttttggtccct 41600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 425 - 605
Target Start/End: Complemental strand, 7658342 - 7658162
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnnttagattatgttcctgtaatttcatattcttccact 524  Q
    ||||||||  ||||||||| ||||||||||   ||||||||| |||||||| ||||          ||||| ||| |||||||||| | |||||||||||    
T  7658342 ggtaaatacctcttttcgtccctgtaatattaacgaatttcggttttagtctctgtaaaaaaaaaaagattttgtccctgtaatttaagattcttccact 7658243  T
Q  525 tttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    |||| |  |||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  7658242 tttggtctctcctttcatcacgtcagcaaaatctgcataaattatgtccctgtaatttcatattcctcccacttttggtcc 7658162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 1250515 - 1250400
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||    
T  1250515 ttagattttgtccctttaatttcatattcttccacttttggtccctcctttcatcacgtcagaagaatctgcataaattacgtccctgtaatttcaaatt 1250416  T
Q  589 cctcccacttttggtc 604  Q
    ||||| | ||||||||    
T  1250415 cctcctatttttggtc 1250400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 23704742 - 23704848
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| ||||||||||||||| | ||||||||||||| ||||  |||||||||||||||||| || || |||||||| |||||||||||||||    
T  23704742 cctgtaatttcagattcttccacttttggtccctcctttcatcaagtcaatagaatctgcataaattacttccctgtaatttcagattcctcccactttt 23704841  T
Q  601 ggtccct 607  Q
    |||||||    
T  23704842 ggtccct 23704848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 31851548 - 31851430
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| || |||||||| |||    
T  31851548 ttagattttgtccctgtaatttcatattcttccacttttggtctctcctttcatcacatcagcagaatatgcataaattacgtccctgtaatttcagatt 31851449  T
Q  589 cctcccacttttggtccct 607  Q
    |||| || ||||| |||||    
T  31851448 cctctcaattttgatccct 31851430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 20963791 - 20963688
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| |||||| |||||||| | |||||||||||||||||| || ||| ||||||||||||||| || ||||||||||||||||||||||||    
T  20963791 cctgtaatttcagattctttcacttttggt-cctcctttcatcacgtcaacataatttgcataaattacgtccctgtaatttcatattcctcccactttt 20963693  T
Q  601 ggtcc 605  Q
    |||||    
T  20963692 ggtcc 20963688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 23383809 - 23383693
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||||||||||| ||||||  | |||||| | |||    
T  23383809 ttagattttgtccctgtaatttcatattcttccacctttggtccctcctttcatcaagtcaacagaatctgcataaactacgtccttgtaattttagatt 23383710  T
Q  589 cctcccacttttggtcc 605  Q
    |||||||||||||||||    
T  23383709 cctcccacttttggtcc 23383693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 48672576 - 48672472
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||||| |||||||||  | |||||||| |||||||||||||||    
T  48672576 cctgtaatttcagattcttccacttttggtccctcctttcatcacgttagcaaaatctgcatcaattacgtccttgtaatttcaaattcctcccactttt 48672477  T
Q  601 ggtcc 605  Q
    |||||    
T  48672476 ggtcc 48672472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 20419845 - 20419727
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| | ||||||||||||| |||| || ||||| |||||||||||||  | |||||||| |||    
T  20419845 ttagattttgtccctgtaatttcagattcttctacttttggtccctcctttcatcaagtcaacaaaatcttcataaattacgtccttgtaatttcagatt 20419746  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  20419745 cctcccacttttggtccct 20419727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 25772640 - 25772523
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||||||||  | |||||||| |||    
T  25772640 ttagattttgtccctgtaatttcagattcttctacttttggtccctcctttcatcaagtcaacagaatctgcataaattacgtccttgtaatttcagatt 25772541  T
Q  589 cctcccacttttggtccct 607  Q
    ||| |||||||||||||||    
T  25772540 cct-ccacttttggtccct 25772523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 20459000 - 20458884
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||||| ||||||||||||||| | |||||||| |||| |||| |||||| ||||||||||||||| || |||||||| |||    
T  20459000 ttagattttgtcactgtaatttcagattcttccacttttggtccctcctttgatcaagtcaacagaatttgcataaattacgtccctgtaatttcagatt 20458901  T
Q  589 cctcccacttttggtcc 605  Q
    |||||| ||||||||||    
T  20458900 cctcccgcttttggtcc 20458884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 426 - 607
Target Start/End: Complemental strand, 48648603 - 48648421
Alignment:
Q  426 gtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt--nnnnnnnnttagattatgttcctgtaatttcatattcttccac 523  Q
    ||||||| |||||||||| || |||||||  ||||||||||||||||||| || |          ||||||| |||   |||||||| | ||||||||||    
T  48648603 gtaaatacttcttttcgtcccagtaatattagcgaatttcgattttagtctctataaaaaaagatttagattttgtctatgtaattttagattcttccac 48648504  T
Q  524 ttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    || || | |||||||||||||||||| |||||||||||||||||||||| || |||||||| |||||| ||| |||||||||||    
T  48648503 ttctggtccctcctttcatcacgtcaacagaatctgcataaattacgtccctgtaatttcagattcct-ccaattttggtccct 48648421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 10409443 - 10409559
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||| ||||||| ||||||  | ||| |||||||||| |||||| ||||||||| |||||||||  | |||||||| |||    
T  10409443 ttagattttgtccttgtaatttcagattcttctacttttagtcccttctttcatcacttcagcaaaatctgcatcaattacgtccttgtaatttcagatt 10409542  T
Q  589 cctcccacttttggtcc 605  Q
    ||||| |||||||||||    
T  10409543 cctcctacttttggtcc 10409559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 12006542 - 12006683
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| ||||||||||||||||           ||||||| ||| |||||||||||| ||||||||    
T  12006542 ggtaaatacctcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaaaaaattagattttgtccctgtaatttcagattcttcc 12006641  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||| |||| || || ||||| |||||||||||||||    
T  12006642 acttttgatccctcattccaccacgttagcagaatctgcata 12006683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 505 - 605
Target Start/End: Complemental strand, 44817128 - 44817028
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    ||||||||||||||| |||||||| | |||| |||||||| ||||  ||||||||||||||||||||   | || ||||| |||||| ||||||||||||    
T  44817128 taatttcatattctttcacttttggtccctcttttcatcaagtcaatagaatctgcataaattacgtacatgtagtttcaaattccttccacttttggtc 44817029  T
Q  605 c 605  Q
    |    
T  44817028 c 44817028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 23704970 - 23704896
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  23704970 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 23704896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 24195105 - 24195031
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || |||||||| |||||||||||||||    
T  24195105 ttagattttgtccttgtaatttcatattcttccacttttggtccctcattccatcacgtaagcagaatctgcata 24195031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 418 - 563
Target Start/End: Original strand, 25772358 - 25772506
Alignment:
Q  418 ttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcata 514  Q
    |||||| ||||||||  ||||||||| ||||||||||  ||||||||||||||||||  ||||           ||||||| ||| | ||||||||||||    
T  25772358 ttttaagggtaaatacctcttttcgtccctgtaatattagcgaatttcgattttagtttctgtaaaaaaaagatttagattttgtccttgtaatttcata 25772457  T
Q  515 ttcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||| | |||| || || ||||| |||||||||||||||    
T  25772458 ttcttccacttttgttccctcattccaccacgtaagcagaatctgcata 25772506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 33162638 - 33162720
Alignment:
Q  523 cttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||||||||   | |||||||| |||||| |||||||||||||    
T  33162638 cttttgatcccttctttcatcacgtcagtagaatctgtataaattacgttcttgtaatttcaaattccttccacttttggtcc 33162720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 38879793 - 38879867
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  38879793 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 38879867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 562
Target Start/End: Original strand, 7658040 - 7658113
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcat 562  Q
    ||||||||||| | |||||||||| |||||| |||||||| | | ||||||||||||||||||| |||||||||    
T  7658040 ttagattatgtccatgtaatttcaaattcttacacttttggtccatcctttcatcacgtcagcaaaatctgcat 7658113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 562
Target Start/End: Original strand, 28218248 - 28218321
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcat 562  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| || || ||||||||||||||||||||    
T  28218248 ttagattttgtccctgtaatttcagattcttccacttttggtccctcattccaccacgtcagcagaatctgcat 28218321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 48672361 - 48672422
Alignment:
Q  502 ctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||| ||||||||||||||||| |||| || || |||||||||||||||||||||    
T  48672361 ctgtaatttcagattcttccacttttgatccctcattccaccacgtcagcagaatctgcata 48672422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 31851322 - 31851382
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||| |||||||||||||  ||| ||||| |||||||||||||||||||||    
T  31851322 tgtaatttcatatttttccacttttgatctctcttttcaccacgtcagcagaatctgcata 31851382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 16995268 - 16995347
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaatta 568  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | || | || || |||||||||||||||||||| |||||    
T  16995268 ttagattttgtccctgtaatttcagattcttccacttttggtcccacattccaccacgtcagcagaatctgcatcaatta 16995347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 48648263 - 48648314
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtcc 476  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  48648263 ggtaaatatctcttttcgtccctgtaatatcagcgaatttcgattttagtcc 48648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 20419605 - 20419679
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||| ||||| | |||| || || ||||| |||||||||||||||    
T  20419605 ttagattttgtccctgtaatttcatattcttccatttttggtccctcattccaccacgtaagcagaatctgcata 20419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 41600027 - 41600101
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| |||||||||| |||||| |||| || || ||||| |||||||||||||||    
T  41600027 ttagattttgtccctgtaatttcagattcttccacatttgatccctcattccaccacgttagcagaatctgcata 41600101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 563
Target Start/End: Original strand, 44816907 - 44816978
Alignment:
Q  492 gattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||| ||| |||||||||||| ||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  44816907 gattttgtccctgtaatttcagattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 44816978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 10409683 - 10409609
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| |||  ||||||||| | ||||||||||||||||| |||| || || ||||| |||||||||||||||    
T  10409683 ttagattttgtctctgtaattttagattcttccacttttgatccctcattccaccacgttagcagaatctgcata 10409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 20458760 - 20458834
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| |||  ||||||||||| ||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  20458760 ttagattttgtcgctgtaatttcagattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 20458834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 23383569 - 23383643
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| ||| |||||||||||||||||| ||||  | |||| || || ||||| |||||||||||||||    
T  23383569 ttagattttgtccctataatttcatattcttccattttttgtccctcattccaccacgtaagcagaatctgcata 23383643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 33162830 - 33162770
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||| ||||||||||||||  |   || ||||| |||||||||||||||||||||    
T  33162830 tgtaatttcaaattcttccacttttagtctttcatttcaccacgtcagcagaatctgcata 33162770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 9481251 - 9481369
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||  || |||||||| |||    
T  9481251 ttagattatgtccctgtaatttcatattcttccaattttggtccctcctttcatcacgtcagcagaatctgcataaattacgttcctgtaatttcagatt 9481350  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| | |||||||||||    
T  9481351 cctcctagttttggtccct 9481369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 607
Target Start/End: Complemental strand, 32017880 - 32017696
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||| ||||||||| ||||||||||  ||||||| || |||||||||||||           ||||||| ||| |||||||||||||||||||||    
T  32017880 ggtaaatatctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcatattcttcc 32017781  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    ||||||| | |||||||||||||||||||| |||| |||||||||||| || || |||||||| |||||| |||||||||||||||    
T  32017780 acttttggtccctcctttcatcacgtcagcggaatatgcataaattacatccctgtaatttcaaattcct-ccacttttggtccct 32017696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 33637628 - 33637746
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||||| |||||||| | ||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||    
T  33637628 ttagattttgttcttgtaattttagattcttccacttttggtccctcctttcattacgtcagcagaatctgcatagattacgtccctgtaatttcagatt 33637727  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  33637728 cctcccacttttggtccct 33637746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 493 - 603
Target Start/End: Complemental strand, 10322036 - 10321926
Alignment:
Q  493 attatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctc 592  Q
    ||||||| |||||||||||| |||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||  | |||||||| |||||||    
T  10322036 attatgtccctgtaatttcagattctttcacttttggtccttcctttcatcacgtcagcagaatctgcataaattacgtccttgtaatttcagattcctc 10321937  T
Q  593 ccacttttggt 603  Q
    |||||||||||    
T  10321936 ccacttttggt 10321926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 601
Target Start/End: Original strand, 30618031 - 30618142
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || |||||||| |||    
T  30618031 ttagattttgtccctgtaatttcatattgttccacttttggtccctccttttatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 30618130  T
Q  589 cctcccacttttg 601  Q
     ||||||||||||    
T  30618131 -ctcccacttttg 30618142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 490 - 605
Target Start/End: Complemental strand, 2299617 - 2299503
Alignment:
Q  490 tagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattc 589  Q
    |||||| ||| |||||||||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||| || | |||||| ||||    
T  2299617 tagattttgtccctgtaatttcagattcttccactttttatccctcctttcatcaagtcaacagaatctgcataaattacgtccctgt-atttcagattc 2299519  T
Q  590 ctcccacttttggtcc 605  Q
    ||||||||||||||||    
T  2299518 ctcccacttttggtcc 2299503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 489 - 609
Target Start/End: Original strand, 24732007 - 24732127
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| | ||||||||||||| |||| || ||||| |||||||||||||  | |||||||| |||    
T  24732007 ttagattttgtccctgtaatttcagattcttctacttttggtccctcctttcatcaagtcaacataatctacataaattacgtccttgtaatttcagatt 24732106  T
Q  589 cctcccacttttggtccctat 609  Q
    |||||||||||||||||||||    
T  24732107 cctcccacttttggtccctat 24732127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 503 - 605
Target Start/End: Complemental strand, 30459196 - 30459094
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttgg 602  Q
    |||||||||| |||||| |||||||| |  ||||||||||||||| |||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  30459196 tgtaatttcagattctttcacttttggtctctcctttcatcacgttagcataatctccataaattacgtccctataatttcaaattcctcccacttttgg 30459097  T
Q  603 tcc 605  Q
    |||    
T  30459096 tcc 30459094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 505 - 605
Target Start/End: Complemental strand, 3230155 - 3230056
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    ||||||||||||||| |||||||| | | || ||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  3230155 taatttcatattctttcacttttggt-catcttttcatcacgtcaacagaatctgcataaatcacgtccctgtaatttcatattcctcccacttttggtc 3230057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 435 - 607
Target Start/End: Complemental strand, 26385641 - 26385469
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttccacttttgat 530  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||||||            ||||||  |||||||| ||||||||||||||||||||||| |    
T  26385641 tcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaacaaagatttagatgttgttcctgcaatttcatattcttccacttttggt 26385542  T
Q  531 tcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
      |||||||||||| ||   || ||| |||||||| |||||| || ||||||||||||||||||| |||||||||||    
T  26385541 ctctcctttcatcaagt---cataatatgcataaa-tacgtccctgtaatttcatattcctcccagttttggtccct 26385469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 504 - 607
Target Start/End: Complemental strand, 18500641 - 18500538
Alignment:
Q  504 gtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggt 603  Q
    ||||||| | ||||||||||||||| | ||||||||||||| | || |||||||||||||||||| ||| || |||||||| || | | |||||||||||    
T  18500641 gtaattttagattcttccacttttggtccctcctttcatcaaggcaacagaatctgcataaattatgtccctgtaatttcagatcctttccacttttggt 18500542  T
Q  604 ccct 607  Q
    ||||    
T  18500541 ccct 18500538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 563
Target Start/End: Original strand, 18500309 - 18500457
Alignment:
Q  418 ttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcata 514  Q
    |||||| ||||||||  ||||||||| ||| ||||||  |||||||||| |||||||||||||           ||||||| ||| ||||||||||||||    
T  18500309 ttttaagggtaaatacctcttttcgtccctataatattagcgaatttcggttttagtccctgtaagaaaaagatttagattttgtccctgtaatttcata 18500408  T
Q  515 ttcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||| | |||| || || ||||| |||||||||||||||    
T  18500409 ttcttccacttttggtccctcattccaccacgtaagcagaatctgcata 18500457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 563
Target Start/End: Original strand, 10321737 - 10321873
Alignment:
Q  428 aaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn-ttagattatgttcctgtaatttcatattcttccacttt 526  Q
    ||||| |||||||||| ||||||||||  ||||||| || ||||||||||||          ||||||||| | ||||||||||||||||||| ||||||    
T  10321737 aaatacttcttttcgtccctgtaatattagcgaattccggttttagtccctgaaaaaaaatattagattatatccctgtaatttcatattcttacacttt 10321836  T
Q  527 tgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    || | |||| ||||| ||||||||||| |||||||||    
T  10321837 tgctccctcatttcaccacgtcagcagtatctgcata 10321873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 9854196 - 9854122
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| ||||| |||||||||| ||||||||||    
T  9854196 ttagattttgtccttgtaatttcatattcttccacttttggtccctcatttcaccacgtcagcaaaatctgcata 9854122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 33637825 - 33637763
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||||||||||| |||||||||| |||| || || |||||||||||||||||||||    
T  33637825 cctgtaatttcatattctttcacttttgatccctcattccaccacgtcagcagaatctgcata 33637763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 14680965 - 14681025
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||||||||||||||| | | || ||||| |||||||||||||||||||||    
T  14680965 tgtaatttcatattcttccacttttggtccttcatttcaccacgtcagcagaatctgcata 14681025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 24732247 - 24732173
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  24732247 ttagattttgtccatgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 24732173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 33714556 - 33714630
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  33714556 ttagattttgtccttgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 33714630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 19284198 - 19284258
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtca 549  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | ||||||||||||| ||||    
T  19284198 ttagattttgtccctgtaatttcagattcttccacttttggtccctcctttcatcatgtca 19284258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 480
Target Start/End: Complemental strand, 2299706 - 2299635
Alignment:
Q  409 ttgaaattgttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgt 480  Q
    |||||||| |||| | ||||||||| ||||||||||||||||||||  ||||||| || ||||||| |||||    
T  2299706 ttgaaattttttttagggtaaatatctcttttcgttcctgtaatattagcgaattccggttttagttcctgt 2299635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 559
Target Start/End: Original strand, 26385347 - 26385417
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctg 559  Q
    ||||||| ||| |||||||||| ||||||||||||||||| | |||| || || ||||| |||||||||||    
T  26385347 ttagattttgtccctgtaattttatattcttccacttttggtccctcattccaccacgtaagcagaatctg 26385417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 30458970 - 30459044
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||  ||||||||||| ||||||| ||||||  |  ||| ||||| |||||||||||||||||||||    
T  30458970 ttagattatgtcactgtaatttcagattcttcaacttttagtctctcatttcaccacgtcagcagaatctgcata 30459044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 33714734 - 33714681
Alignment:
Q  551 cagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    ||||||||||||||||||||||  | |||||||| ||||||| |||||||||||    
T  33714734 cagaatctgcataaattacgtccttgtaatttcagattcctctcacttttggtc 33714681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 528
Target Start/End: Original strand, 17142746 - 17142785
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttg 528  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  17142746 ttagattatgtccctgtaatttcaaattcttccacttttg 17142785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 607
Target Start/End: Complemental strand, 17142930 - 17142829
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    ||||||||||||  |||||||||| | |||  ||| | |||||||  ||| |||| |||||||| ||| || |||||||| ||||||| |||||||||||    
T  17142930 taatttcatatttctccacttttggt-ccttttttaaccacgtcaatagattctgtataaattaggtccctgtaatttcagattcctctcacttttggtc 17142832  T
Q  605 cct 607  Q
    |||    
T  17142831 cct 17142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 605
Target Start/End: Complemental strand, 14681136 - 14681075
Alignment:
Q  544 acgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    ||||||| |||||||||| | |||||||| || |||||||| ||| ||| ||||||||||||    
T  14681136 acgtcagtagaatctgcacatattacgtccctgtaatttcagattactctcacttttggtcc 14681075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 32017619 - 32017679
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||| ||||||||||||||| | | |  || || |||||||||||||||||||||    
T  32017619 tgtaatttcagattcttccacttttggtcctttattccaccacgtcagcagaatctgcata 32017679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 20498815 - 20498932
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||| ||||| ||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||  ||||||||||||||    
T  20498815 ttagattatgtccctgta-tttcagattcttccacttttggtccctccttttatcacgtcagtagaatctgcataaattacgtcaatataatttcatatt 20498913  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  20498914 cctcccacttttggtccct 20498932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 23854975 - 23854857
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| |||  ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  23854975 ttagattttgtctctgtaattttatattcttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagatt 23854876  T
Q  589 cctcccacttttggtccct 607  Q
    ||||||||||||| |||||    
T  23854875 cctcccacttttgatccct 23854857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 39878171 - 39878289
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    |||||||||||  ||||||||||| ||||||||||||||| |  |||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||    
T  39878171 ttagattatgtatctgtaatttcagattcttccacttttggtcactcctttcatcaagtcagcaaaatctgcataaattacgtccctgtaatttcatatt 39878270  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  39878271 cctcccacttttggtccct 39878289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 42671028 - 42670910
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||  || |||||||| |||    
T  42671028 ttagattatgtccctgtaatttcatatttttccacttttggtccctcctttcatcacgtcagcagaatctgcataaattacgttcctgtaatttcagatt 42670929  T
Q  589 cctcccacttttggtccct 607  Q
    ||||| | |||||||||||    
T  42670928 cctcctagttttggtccct 42670910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 491 - 607
Target Start/End: Complemental strand, 22263498 - 22263382
Alignment:
Q  491 agattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcc 590  Q
    ||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||    
T  22263498 agattttgtccctgtaatttcatattcttccacttttggtccctcctttcatcacgtcagcataatctgcataaattacgtccctgtaatttcagattcc 22263399  T
Q  591 tcccacttttggtccct 607  Q
    ||| | |||||||||||    
T  22263398 tcctagttttggtccct 22263382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 501 - 609
Target Start/End: Original strand, 23806033 - 23806141
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||| | ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||    
T  23806033 cctgtaattttagattcttccacttttggtccctcctttcatcacgtcagcagaatccgcataaattacgtccctgtaatttcagattcctcccactttt 23806132  T
Q  601 ggtccctat 609  Q
    |||||||||    
T  23806133 ggtccctat 23806141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 505 - 607
Target Start/End: Complemental strand, 26560847 - 26560745
Alignment:
Q  505 taatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||    
T  26560847 taatttcatattcttccacttttggtctctcctttcatcacgtcagcagaatctgcataaattacgtccctgtaatttcagattcctcccacttttgatc 26560748  T
Q  605 cct 607  Q
    |||    
T  26560747 cct 26560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 26236208 - 26236313
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||||| |||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||    
T  26236208 cctgtaatttcagattctttcacttttggtccctcctttcatcacgtcagcagaatttgcataaattacgtccctgtaatttcatattcct-ccactttt 26236306  T
Q  601 ggtccct 607  Q
    |||||||    
T  26236307 ggtccct 26236313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 17463160 - 17463278
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| ||||||||||||  |||| ||||||||| | |||| |||||||| |||| |||||||||||||||||||||| || |||||||| |||    
T  17463160 ttagattttgtccctgtaatttcaggttctcccacttttggtccctcatttcatcaagtcaacagaatctgcataaattacgtccctgtaatttcagatt 17463259  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  17463260 cctcccacttttggtccct 17463278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 603
Target Start/End: Complemental strand, 17850895 - 17850781
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | |||| |||||||||||||||| ||||||||| |||||||||  | |||||||| |||    
T  17850895 ttagattttgtccctgtaatttcagattcttccacttttggtccctcttttcatcacgtcagcaaaatctgcatcaattacgtccttgtaatttcagatt 17850796  T
Q  589 cctcccacttttggt 603  Q
    |||||||||||||||    
T  17850795 cctcccacttttggt 17850781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 435 - 605
Target Start/End: Original strand, 26135828 - 26136002
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttccacttttgat 530  Q
    ||||||||| ||||||||||  ||||||| ||||||||||||||||            ||||||| ||| |||||||||||| ||||||| ||||||| |    
T  26135828 tcttttcgtccctgtaatattagcgaattccgattttagtccctgtaaaaaaaaagatttagattttgtccctgtaatttcagattcttctacttttggt 26135927  T
Q  531 tcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
     ||||||||||||| |||| ||||||||||||||||||||||  | |||||||| ||||||| ||||||||||||    
T  26135928 ccctcctttcatcaagtcaacagaatctgcataaattacgtccttgtaatttcagattcctctcacttttggtcc 26136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 435 - 607
Target Start/End: Original strand, 19251482 - 19251657
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttccacttttgatt 531  Q
    ||||||||| ||||||||||  |||||||||| |||||||||||||           ||||||| ||| |||||||||||||||||||||||||||| |     
T  19251482 tcttttcgtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaagatttagattttgtccctgtaatttcatattcttccacttttggtc 19251581  T
Q  532 cctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtccct 607  Q
    |||||||||||||| |||||||||| | ||||||||| ||   | |||||||| |||||||| ||||||| |||||    
T  19251582 cctcctttcatcacatcagcagaatatacataaattatgttcttgtaatttcaaattcctccaacttttgatccct 19251657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 15106136 - 15106254
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||| | ||| ||||||||||| | ||||||||||||||||||||  ||||||||| ||||| |||  | |||||||| |||    
T  15106136 ttagattttgtccctgtaattttagattattccacttttggtccctcctttcatcacgtcagctaaatctgcatcaattaagtccttgtaatttcagatt 15106235  T
Q  589 cctcccacttttggtccct 607  Q
    |||||||||||||||||||    
T  15106236 cctcccacttttggtccct 15106254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 607
Target Start/End: Original strand, 33290118 - 33290236
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| | |||||||||||| || |||||||||| | |||  ||| | ||||||||||||||||||||||||| |||| || |||||||| |||    
T  33290118 ttagattctgtccttgtaatttcatactcctccacttttggtcccttatttaaccacgtcagcagaatctgcataaatttcgtccctgtaatttcagatt 33290217  T
Q  589 cctcccacttttggtccct 607  Q
    |||||| ||||||||||||    
T  33290218 cctcccccttttggtccct 33290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 607
Target Start/End: Complemental strand, 13284716 - 13284599
Alignment:
Q  490 tagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattc 589  Q
    |||||| ||| | |||||||||| |||| |||||||||| | |||| ||| | ||||||| |||||||| |||||||||||||  | |||||| | ||||    
T  13284716 tagattttgtccttgtaatttcagattcctccacttttggtccctcatttaaccacgtcaacagaatctacataaattacgtccttgtaatttaagattc 13284617  T
Q  590 ctcccacttttggtccct 607  Q
    ||||||||||||||||||    
T  13284616 ctcccacttttggtccct 13284599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 563
Target Start/End: Complemental strand, 15106442 - 15106302
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn--ttagattatgttcctgtaatttcatattcttcca 522  Q
    ||||||||  ||||||||| || |||||||  ||||||||||||||||||||||||          ||||||| ||| |||||||||||| |||||||||    
T  15106442 ggtaaatacctcttttcgtccccgtaatattagcgaatttcgattttagtccctgtaaaaaaaaatttagattttgtccctgtaatttcagattcttcca 15106343  T
Q  523 cttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||| |||| || || |||||||||| ||||||||||    
T  15106342 cttttgatccctcattccaccacgtcagcaaaatctgcata 15106302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 19251779 - 19251705
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||| | | |||| ||||| |||||||||||||||||||||    
T  19251779 ttagattctgtccttgtaatttcatattcttccactttcggtccctcatttcaccacgtcagcagaatctgcata 19251705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 22263260 - 22263334
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||  || || |||||||||||||||||||||    
T  22263260 ttagattttgtccctgtaatttcatattcttccacttttggtcccttattccaccacgtcagcagaatctgcata 22263334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 563
Target Start/End: Original strand, 26560561 - 26560697
Alignment:
Q  429 aatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn--ttagattatgttcctgtaatttcatattcttccacttt 526  Q
    ||||| ||||||||| ||||||||||   |||||||||||||||||||||||          |||||||  || |||||||||||| |||||||||||||    
T  26560561 aatatctcttttcgtccctgtaatattaacgaatttcgattttagtccctgtaaaaaaagatttagatttagtccctgtaatttcagattcttccacttt 26560660  T
Q  527 tgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    || | |||  || || |||||||||||||||||||||    
T  26560661 tggtcccttattccaccacgtcagcagaatctgcata 26560697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 26136112 - 26136052
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||||||||||||||||||||||  ||| || |||||||| |||||||||||||||    
T  26136112 tgtaatttcatattcttccacttttgatctctcgttccatcacgtaagcagaatctgcata 26136052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 17850588 - 17850729
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    ||||||||  ||||||||| ||||||||||  ||||||| |||||||||||||| |           ||||||| |||  ||||||||| | ||||||||    
T  17850588 ggtaaatacctcttttcgtccctgtaatattagcgaattccgattttagtccctataaaaaaaagatttagattttgtctctgtaatttaagattcttcc 17850687  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||||| |||| || || |||||||||||||||||||||    
T  17850688 acttttgatccctcattccaccacgtcagcagaatctgcata 17850729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 17463400 - 17463326
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| |||| || || || || |||||||||||||||    
T  17463400 ttagattttgtccctgtaattgcatattcttccacttttgatccctcattccaccatgtaagcagaatctgcata 17463326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 23806261 - 23806187
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || |||||||||| ||| ||||||    
T  23806261 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtcagcaaaatttgcata 23806187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 30390528 - 30390602
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||||||||||||||||||| | |||| || || ||||| |||| ||||||||||    
T  30390528 ttagattttgtccctgtaatttcatattcttccacttttggtccctcattccaccacgtaagcaaaatctgcata 30390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 13254566 - 13254626
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtca 549  Q
    ||||||| ||| | |||||||||| |||||| |||||||| ||||||||||||||||||||    
T  13254566 ttagattttgtccttgtaatttcagattctttcacttttggttcctcctttcatcacgtca 13254626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 425 - 559
Target Start/End: Original strand, 34548575 - 34548712
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn---ttagattatgttcctgtaatttcatattcttcc 521  Q
    |||||||| |||||||||| ||||||||||  | |||||| | |||||||||||||           ||||||| ||| | |||||||||||||| ||||    
T  34548575 ggtaaatacttcttttcgtccctgtaatattagtgaattttggttttagtccctgtaaaaaaaagatttagattttgtccatgtaatttcatattgttcc 34548674  T
Q  522 acttttgattcctcctttcatcacgtcagcagaatctg 559  Q
    || |||| |  |||||||||||||||||| ||||||||    
T  34548675 acctttggtcactcctttcatcacgtcagtagaatctg 34548712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 563
Target Start/End: Original strand, 13284489 - 13284551
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||||||||||||||||  | |||| ||||| |||| || |||||||||||||    
T  13284489 cctgtaatttcatattcttccacttttagtccctcatttcaccacgacaacagaatctgcata 13284551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 20499054 - 20498980
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| |||||| |||||||| | | || ||||| ||| |||||||||||||||||    
T  20499054 ttagattttgtccctgtaatttcagattctttcacttttggtccttcatttcaccacatcagcagaatctgcata 20498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 26236404 - 26236330
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||| ||||| | |||| || || ||||| |||||||||||||||    
T  26236404 ttagattttgtccctgtaatttcagattcttccatttttggtccctcattccaccacgtaagcagaatctgcata 26236330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 528
Target Start/End: Original strand, 23854699 - 23854796
Alignment:
Q  435 tcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaatttcatattcttccacttttg 528  Q
    ||||||||| ||||||||||  |||||||||| |||||||||||||            ||||||| ||| ||||||||||||||||||||||||||||    
T  23854699 tcttttcgtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaagatttagattttgtccctgtaatttcatattcttccacttttg 23854796  T

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Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 561
Target Start/End: Complemental strand, 30959981 - 30959909
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgca 561  Q
    ||||||||||| ||||||||||||||||| ||||||||| || |||| ||| | |  || |||||||||||||    
T  30959981 ttagattatgtccctgtaatttcatattcctccacttttaatccctcgtttaaccctgttagcagaatctgca 30959909  T

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Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 39878399 - 39878337
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||| ||| || |||||||| | |||| ||||| |||| ||||||||||||||||    
T  39878399 cctgtaatttcagattttttcacttttggtccctcatttcaccacgccagcagaatctgcata 39878337  T

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Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 13254734 - 13254677
Alignment:
Q  500 tcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatc 557  Q
    ||||||||||||| ||||||||||||||| | |||| ||||| ||| | |||||||||    
T  13254734 tcctgtaatttcagattcttccacttttggtccctcatttcaccacataagcagaatc 13254677  T

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Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 526
Target Start/End: Complemental strand, 44098931 - 44098894
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttt 526  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  44098931 ttagattatgtccctgtaatttcagattcttccacttt 44098894  T

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Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 33290344 - 33290284
Alignment:
Q  503 tgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    |||||||||||||||||||||||||| | |||  ||||| |||||||  | ||||||||||    
T  33290344 tgtaatttcatattcttccacttttggtccctaatttcaccacgtcaaaaaaatctgcata 33290284  T

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Target: scaffold0185 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 489 - 604
Target Start/End: Complemental strand, 4178 - 4063
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||||||||  |||||||||| |||||| || ||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||    
T  4178 ttagattatgttgttgtaatttcagattctttcatttttggtccctcctttcatcacgtcagcagaatctgcataaattatgtctctgtaatttcagatt 4079  T
Q  589 cctcccacttttggtc 604  Q
    ||||||||||||||||    
T  4078 cctcccacttttggtc 4063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 561
Target Start/End: Original strand, 3860 - 4010
Alignment:
Q  415 ttgttttaaaggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnn----ttagattatgttcctgtaattt 510  Q
    ||||||| | ||||||||| ||||||||| ||||||||||  ||||||| || |||||||||||||            ||||||||||| ||||||||||    
T  3860 ttgtttttagggtaaatatctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaaaaaaaagatttagattatgtccctgtaattt 3959  T
Q  511 catattcttccacttttgattcctcctttcatcacgtcagcagaatctgca 561  Q
    || ||||||||||| ||| |  ||| ||||| || ||||||||||||||||    
T  3960 caaattcttccactgttggtcgctcatttcaccatgtcagcagaatctgca 4010  T

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Target: scaffold0176 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 425 - 604
Target Start/End: Complemental strand, 16005 - 15827
Alignment:
Q  425 ggtaaatatttcttttcgttcctgtaatatctgcgaatttcgattttagtccctgtnnnnnnnnttagattatgttcctgtaatttcatattcttccact 524  Q
    ||||||||| ||||||||| | ||||||||  ||||||| || |||||||| ||||          ||||| ||| ||||||||||||||||||| ||||    
T  16005 ggtaaatatctcttttcgtccatgtaatattagcgaattccggttttagtctctgtaaaaaaaaaaagattttgtccctgtaatttcatattctttcact 15906  T
Q  525 tttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtc 604  Q
    |||| |  ||||||||||||||||||||||||||||||||||||   | || |||||||| |||||||||||||||||||    
T  15905 tttggtctctcctttcatcacgtcagcagaatctgcataaatta-tacgctgtaatttcagattcctcccacttttggtc 15827  T

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Target: scaffold0361 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 501 - 607
Target Start/End: Original strand, 4644 - 4750
Alignment:
Q  501 cctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccactttt 600  Q
    |||||||||| | ||||||| ||||||| | |||||||| |||| |||| ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  4644 cctgtaatttgagattcttctacttttggtccctccttttatcaagtcaacagaatctgcataaattacgtccgtgtaatttcagattcctcccactttt 4743  T
Q  601 ggtccct 607  Q
    |||||||    
T  4744 ggtccct 4750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 4872 - 4798
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| | |||||||||||||||||||||||||| | |||| || || ||||| |||||||||||||||    
T  4872 ttagattttgtccttgtaatttcatattcttccacttttggtccctcattccaccacgtaagcagaatctgcata 4798  T

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Target: scaffold0881 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0881
Description:

Target: scaffold0881; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 504 - 607
Target Start/End: Complemental strand, 513 - 411
Alignment:
Q  504 gtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggt 603  Q
    ||||||||| ||| ||||||||||| |  ||||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||||||||  |||||||    
T  513 gtaatttcagattattccacttttggtatctcctttaatcacatcagcagaatctgcataaattacgtct-tgtaatttcagattcctcccgattttggt 415  T
Q  604 ccct 607  Q
    ||||    
T  414 ccct 411  T

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Target: scaffold0141 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 514 - 605
Target Start/End: Original strand, 8417 - 8508
Alignment:
Q  514 attcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatattcctcccacttttggtcc 605  Q
    |||||| |||||||| |  ||||||||||||||||| || ||||||||| ||||||||| || |||||||| ||||||||||||||||||||    
T  8417 attctttcacttttggtctctcctttcatcacgtcaacaaaatctgcatcaattacgtccctgtaatttcagattcctcccacttttggtcc 8508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 8631 - 8557
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||| | ||||||||||||||| | |||| || || |||||||||||||||||||||    
T  8631 ttagattttgtccctgtaattttagattcttccacttttggtccctcattccaccacgtcagcagaatctgcata 8557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 607
Target Start/End: Complemental strand, 7508 - 7390
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcataaattacgtctctataatttcatatt 588  Q
    ||||||| ||| |||||||||||| ||||||| ||||||| |   ||||||||||| |||| || |||||||||||||||| ||  | |||||||| |||    
T  7508 ttagattttgtccctgtaatttcagattcttctacttttggtctatcctttcatcaagtcaacaaaatctgcataaattacatccttgtaatttcagatt 7409  T
Q  589 cctcccacttttggtccct 607  Q
    ||| |||||||||||||||    
T  7408 cctaccacttttggtccct 7390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 7295 - 7332
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttt 526  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  7295 ttagattttgtccctgtaatttcatattcttccacttt 7332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 12291 - 12217
Alignment:
Q  489 ttagattatgttcctgtaatttcatattcttccacttttgattcctcctttcatcacgtcagcagaatctgcata 563  Q
    ||||||| ||| |||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  12291 ttagattttgtccctgtaatttcagattcttccacttttggtccatcctttcatcacgtcagcagaatctgcata 12217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 41879 - 41814
Alignment:
Q  180 taggttcactctcaatattcctagtgaccccttcctcttgtcttaaacctaggaagcttcttaatg 245  Q
    |||||| ||||||||||||||||||||||||||||  |||| |||| || ||||||||| ||||||    
T  41879 taggtttactctcaatattcctagtgaccccttccatttgttttaatccaaggaagcttgttaatg 41814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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