View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_low_2 (Length: 550)
Name: NF20716_low_2
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 75 - 534
Target Start/End: Original strand, 30889605 - 30890064
Alignment:
| Q |
75 |
ttattttcatgaggctaacatggatactgaattgtattttactttgatctataggagaattggctttgctagctgagggaatgaatcctggaggcgaagc |
174 |
Q |
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| T |
30889605 |
ttattttcatgaggctaacatggatactgaattgtattttactttgatctataggagaattggctttgctagctgagggaatgaatcctggaggcgaagc |
30889704 |
T |
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| Q |
175 |
aaccactatagaagaatacataattaccccagcaagtgagctcctttcaaacaaggaagctgggaaggattgtataaagctttatggacctaatcaagga |
274 |
Q |
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| T |
30889705 |
aaccactatagaagaatacataattaccccagcaagtgagctcctttcaaacaaggaagctgggaaggattgcataaagctttatggacctaatcaagga |
30889804 |
T |
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| Q |
275 |
gaactttcaatgattgcacaacaagtaaccagacaaaatagcacaatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttcccatgttt |
374 |
Q |
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| T |
30889805 |
gaactttcaatgattgcacaacaagtaaccagacaaagtagcacgatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttcccatgttt |
30889904 |
T |
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| Q |
375 |
cttatagtattaaggacaatattgtcaatctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgctaatttctaa |
474 |
Q |
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| T |
30889905 |
cttatagtattaaggacaatattgtcaatctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgctaatttctaa |
30890004 |
T |
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| Q |
475 |
agtgtcgagtaatgatccgagtccctttggtacaaatgacaacctgcatactccattact |
534 |
Q |
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| T |
30890005 |
agtgtcgagtaatgatccgagtccctttggtacaaatgacaacctgcatactccattact |
30890064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30889556 - 30889474
Alignment:
| Q |
1 |
attcacaatttaactttttatgtataaactatccgtataacagatgaataaacgaagacagatagtccagctatttattttca |
83 |
Q |
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| T |
30889556 |
attcacaatataactgcttatgtataaactatccgtataacagatgaataaacgaagacagatagtccagctatttattttca |
30889474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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