View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_low_3 (Length: 549)
Name: NF20716_low_3
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 30889532 - 30890064
Alignment:
| Q |
1 |
atacataaaaagttaaattgtgaatgcttaattaagttgttcgtcaaaacaggcctcattattgtttccgacattattttcatgaggctaacatggatac |
100 |
Q |
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| T |
30889532 |
atacataagcagttatattgtgaatgcttaattaagttgttcgtcaaaacaggcctcattattgtttccgacattattttcatgaggctaacatggatac |
30889631 |
T |
|
| Q |
101 |
tgaattgtattttactttgatctataggagaattggctttgctagctgagggaatgaatcctggaggcgaagcaaccactatagaagaatacataattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889632 |
tgaattgtattttactttgatctataggagaattggctttgctagctgagggaatgaatcctggaggcgaagcaaccactatagaagaatacataattac |
30889731 |
T |
|
| Q |
201 |
cccagcaagtgagctcctttcaaacaaggaagctgggaaggattgtataaagctttatggacctaatcaaggagaactttcaatgattgcacaacaagta |
300 |
Q |
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| T |
30889732 |
cccagcaagtgagctcctttcaaacaaggaagctgggaaggattgcataaagctttatggacctaatcaaggagaactttcaatgattgcacaacaagta |
30889831 |
T |
|
| Q |
301 |
accagacaaaatagcacaatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttcccatgtttcttatagtattaaggacaatattgtca |
400 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889832 |
accagacaaagtagcacgatatcgggaggcatgttaacaatttcgcgccaaggaagcacgacttcccatgtttcttatagtattaaggacaatattgtca |
30889931 |
T |
|
| Q |
401 |
atctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgctaatttctaaagtgtcgagtaatgatccgagtccctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30889932 |
atctctttagtagcatgcatgaaaatagtcctcctgaaggtggaggttcaagaggaagtatgctaatttctaaagtgtcgagtaatgatccgagtccctt |
30890031 |
T |
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| Q |
501 |
tggtacaaatgacaacctgcatactccattact |
533 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30890032 |
tggtacaaatgacaacctgcatactccattact |
30890064 |
T |
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