View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_low_5 (Length: 459)
Name: NF20716_low_5
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 44440426 - 44440019
Alignment:
| Q |
11 |
cacagataaggaccttttaccatgttttcaatttaacaaatcgattgctagtcactgctttaacccttcccaatattacctttcaataaatcattatagg |
110 |
Q |
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| T |
44440426 |
cacaaataaggagcttttactatgttttcaatttaacaaatcgattgctagtcactgctttaacccttcccaatattacctttcaataaatcattatagg |
44440327 |
T |
|
| Q |
111 |
ttaataccatccgtctaagttatattacaattttaaatttctaaatgttaggtccaaagcactctaaatcaaaatcgaaaacaacacaattgaataaaat |
210 |
Q |
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| T |
44440326 |
ttaatatcatccgtctaagttatattacaattttaaatttctaaatgttaggtccaaagcaatctaaatcaa---------------aattgaataaaat |
44440242 |
T |
|
| Q |
211 |
tggataaattttaatctcgtcatgtgaaatatttcagattctttttcacgaatttgataatatttcacgaaatcaatacatgcta-nnnnnnnnnnnnnn |
309 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
44440241 |
tggataaattttaatatcgtgatgtgaaatatttcagattc-ttttcacgaattggataata-ttcacgaaatcaatacatgttattttttatttttttt |
44440144 |
T |
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| Q |
310 |
nnatcaaatgaaaaccaatccaatctagtcgga-nnnnnnnnaaagaaatcgtccatttggtctgtgtgtgatttgaatcttcaaatcaacaattgtttt |
408 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44440143 |
ttatcaaatgaaaaccaatccaatctagtcggattttttttgaaagaaattgtccatttggtctgtgtgtgatttgaatctttaaatcaacaattgtttt |
44440044 |
T |
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| Q |
409 |
actttaaaaccgatcttaaccgcat |
433 |
Q |
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||||||||||||||||||||||||| |
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| T |
44440043 |
actttaaaaccgatcttaaccgcat |
44440019 |
T |
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