View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20716_low_7 (Length: 278)
Name: NF20716_low_7
Description: NF20716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20716_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 23187703 - 23187546
Alignment:
| Q |
18 |
agtataacatgaatttgaatagaagtacaacacgatttatttcacataagataaagaggtataactaaggtggcatgtcaactaagtaaatacaatccaa |
117 |
Q |
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| T |
23187703 |
agtataacatgaatttgaatagaagtactacacgatttatttcacataagataaagaggtataattaaagtggcatgtcaactaagtaaatacaatccaa |
23187604 |
T |
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| Q |
118 |
caaaataccgccaactatatatcagaagcctccaccgcctcctcaacaccctccgccg |
175 |
Q |
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| T |
23187603 |
caaaataccgccaactatatatcagaagcctccaccgtcttctcaacaccctccgccg |
23187546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 23171671 - 23171580
Alignment:
| Q |
83 |
taaggtggcatgtcaactaagtaaatacaatccaacaaaataccgccaactatatatcagaagcctccaccgcctcctcaacaccctccgcc |
174 |
Q |
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| T |
23171671 |
taaggtggcatgtcaactaagtaaatacaatccaacaaaataccgccaaccatatctcagaagcctccaacgccacctcaacaccctccgcc |
23171580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 23179170 - 23179015
Alignment:
| Q |
20 |
tataacatgaatttgaatagaagtacaacacgatttatttcacataagataaagaggtataactaaggtggcatgtc----aactaagtaaatacaatcc |
115 |
Q |
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| T |
23179170 |
tataacatcaatttgaatagaagtacaacaagatttatttcacataaga--------tataattaaggtggcatgtcaaataagtaagtaaatacaatcc |
23179079 |
T |
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| Q |
116 |
aacaa-----aataccgccaactatatatcagaagcctccaccgcctcctcaacaccctccgcc |
174 |
Q |
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| T |
23179078 |
aacaaaatagaatacctccaaccatatctcagaagcctccaccaccacctcaacacccaccgcc |
23179015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 23171776 - 23171715
Alignment:
| Q |
20 |
tataacatgaatttgaatagaagtacaacacgatttatttcacataagataaagaggtataa |
81 |
Q |
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|||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23171776 |
tataacatcaatttgaatagaagtacaacatggtttatttcacataagataaagaggtataa |
23171715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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