View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_high_12 (Length: 344)
Name: NF20717_high_12
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 141 - 326
Target Start/End: Original strand, 35122367 - 35122551
Alignment:
| Q |
141 |
cacctttatatttgaattataaagataagatacattaagaatttaatttgttagttaccataaggatattctttgcgccttctcttctgaacctcaacat |
240 |
Q |
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| T |
35122367 |
cacctttatatttgaattataa-gataagatacattaagaatttaatttgttagttaccataaggatattctttgcgccttctcttctgaacctcaacat |
35122465 |
T |
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| Q |
241 |
aatctcccggtttcaaattattgatataattaggtttataatagtcagataaaaaagtctgaggtggtggtattctcaacatatcc |
326 |
Q |
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| T |
35122466 |
aatctcccggtttcaaattattgatataattaggtttataatagtcagataaaaaagtctgaggtggtggtattctcaacatatcc |
35122551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 35122239 - 35122298
Alignment:
| Q |
13 |
tcatcacatgactccaaatgaccaattatagcaaaccaccaatctatatagctcattcac |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35122239 |
tcatcacatgactccaaatgaccaattatagcaaaccaccaatctatatagctcattcac |
35122298 |
T |
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