View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20717_high_14 (Length: 336)
Name: NF20717_high_14
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_high_14 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 15009336 - 15009638
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15009336 |
gtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagg |
15009435 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15009436 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaata |
15009535 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15009536 |
ttggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
15009635 |
T |
|
| Q |
318 |
cca |
320 |
Q |
| |
|
||| |
|
|
| T |
15009636 |
cca |
15009638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 15030434 - 15030736
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15030434 |
gtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagg |
15030533 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15030534 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaata |
15030633 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15030634 |
ttggactaaaaggtacacttcagagtctcaacttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
15030733 |
T |
|
| Q |
318 |
cca |
320 |
Q |
| |
|
||| |
|
|
| T |
15030734 |
cca |
15030736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 15023453 - 15023759
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15023453 |
gtttgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaaacaagccttgacaaccatagcagg |
15023552 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15023553 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaata |
15023652 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
||||| |||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
15023653 |
ttggattaaacggtactcttcaaagtctcaatttctcatcacttccgaaaatacacaccttagttttaacaaacaactccttgtatggagttattccaca |
15023752 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
15023753 |
ccatatt |
15023759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 324
Target Start/End: Complemental strand, 14534867 - 14534575
Alignment:
| Q |
35 |
cacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagggcatttctctcttcatg |
134 |
Q |
| |
|
||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
14534867 |
caccttatgctgcaacaaatgaccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatg |
14534768 |
T |
|
| Q |
135 |
gattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaatattggactaaaaggt |
231 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14534767 |
gattggcaataatccttgtagtagttgggaaggaatcacgtgtgattataaatcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggt |
14534668 |
T |
|
| Q |
232 |
acgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatatt |
324 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14534667 |
acgcttcaaagtctcaatttctcatcacttacaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatatt |
14534575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 14501886 - 14502192
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||| |
|
|
| T |
14501886 |
gtttgtaattgcaacatcacctcatgctgcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacaacagtagg |
14501985 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
14501986 |
gcattgctttcttcatggaatggtaataatccttgtagttgggaaggaatcacatgtgataatgattcaaaatccatcaacaaggtaaatctcactgata |
14502085 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| || || |||| ||||||||| |
|
|
| T |
14502086 |
ttggactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccgcaccttagttttaaaaaacaactcattctatggagctgttccaca |
14502185 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
14502186 |
ccatatt |
14502192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 31 - 324
Target Start/End: Original strand, 15000743 - 15001039
Alignment:
| Q |
31 |
acatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagggcatttctctctt |
130 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| |||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
15000743 |
acatcacctcatgctgcaagaaaaaaccaaggtagtgaggttgatgctctgttgaaatggaaggcaagccttgacaaccacagcagggcattgctctctt |
15000842 |
T |
|
| Q |
131 |
catggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaatattggactaaa |
227 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
15000843 |
catggattggcaataatccttgtagtagttgggaaggaatcacgtgtgattatcaatcaaaatccatcaacatgataaatctcaccaatattggactaaa |
15000942 |
T |
|
| Q |
228 |
aggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatatt |
324 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15000943 |
aggtacgcttcaaactctcaatttctcatcacttacaaaaatccacaccttagttttaacaaacaacttcttgcacggagttgttccacaccatatt |
15001039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 21 - 324
Target Start/End: Original strand, 15035212 - 15035518
Alignment:
| Q |
21 |
tgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagggca |
120 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |||| || ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
15035212 |
tgtaattgccacatcacctcatgctgcaacaaaaatcaaaggcagtgaggcagatgctctgttgaagtggaaagcaagccttgacaaccacaacagggca |
15035311 |
T |
|
| Q |
121 |
tttctctcttcatggattggtaataatcctt---gtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
15035312 |
ttgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaata |
15035411 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| ||| | | | ||||||||||| | ||||| ||| ||||| || |||||||| |
|
|
| T |
15035412 |
ttggactaaaaggtacgcttcaaactctcaatttctcatcacttccgaaattgaaaagtttagttttaagcagcaactccttctacggtgtagttccaca |
15035511 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
15035512 |
ccatatt |
15035518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 33 - 324
Target Start/End: Original strand, 15015751 - 15016045
Alignment:
| Q |
33 |
atcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagggcatttctctcttca |
132 |
Q |
| |
|
||||||||||||||| ||||||||| |||| | ||||| || ||||||||||||||||| |||| |||||||||| |||| ||||| ||||||||| |
|
|
| T |
15015751 |
atcacctcatgctgcaacaaaaatcaaaggccgtgaggcagagtctctgttgaagtggaaagaaagctttgacaaccaaagcaaagcattactctcttca |
15015850 |
T |
|
| Q |
133 |
tggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaatattggactaaaag |
229 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15015851 |
tggattggtaataatccttgtagtagctgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaag |
15015950 |
T |
|
| Q |
230 |
gtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatatt |
324 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
15015951 |
gtacacttcaaagtctcaatttctcatcacttccaaaaatccgtaccttagttttaagaaacaacttcctgtacggcattgttccacaccatatt |
15016045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 14465779 - 14466079
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
|||||| || || |||||| ||||| |||| ||||||||| || | || ||| | ||||||||||||||||||||| ||||| |||||||||| |||| | |
|
|
| T |
14465779 |
gtttgttatggccacatcatctcatactgcaacaaaaatcaaaagcagtgagacagatgctctgttgaagtggaaagcaagctttgacaaccaaagcaag |
14465878 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcacca |
214 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||| || ||| |||||||||||||||||| |
|
|
| T |
14465879 |
acactactctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgaatcaaaatcaatctacaaggtaaatctcacca |
14465978 |
T |
|
| Q |
215 |
atattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc |
314 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| | |||||||| ||| || |||||| |||| |
|
|
| T |
14465979 |
atattggactaaaaggtacgcttcaaactctcaatttctcatcacttccaaaaatccaagaattagttttgagaaacaactccttctatggagttattcc |
14466078 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
14466079 |
a |
14466079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 14480674 - 14480995
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||| |||||| | |||||| |||||||| || ||||||||| ||||| ||||||| || |||| | |
|
|
| T |
14480674 |
gtttgtaatggttacatcacctcatgctgatgcaaaaaaccaaggcaacgaggcagatgctcttttaaagtggaaagcaagctttgacaaacaaagcaag |
14480773 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggt---------------tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaagg |
202 |
Q |
| |
|
| | | |||||||||||||||||||||||||||||| || ||||||||||||| |||||| || | ||||| || || |||||| |
|
|
| T |
14480774 |
gaaatactctcttcatggattggtaataatccttgtagtagtattggactaagttgggaaggaatcatatgtgataataactcaaaatctattaacaaga |
14480873 |
T |
|
| Q |
203 |
taaatctcaccaatattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgta |
302 |
Q |
| |
|
|| ||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||| | |||||||||||| || |
|
|
| T |
14480874 |
tagatctcaccagttttgaactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttttgagaaacaacttcttcta |
14480973 |
T |
|
| Q |
303 |
cggagttgttccacaccatatt |
324 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
14480974 |
tggagttattccataccatatt |
14480995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 14524904 - 14524598
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| || |||||||||| |||| | |||| || ||| | |||||||| ||||| | ||||| |||||| ||||| |||||||||| |||| | |
|
|
| T |
14524904 |
gtttgtaatggccacatcacctcttgcttcagcaaatatgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaag |
14524805 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
| || ||||||||||||||||||||||| ||||| ||||| |||||||| |||||| | ||||| || ||| ||||| || |||| | | || |
|
|
| T |
14524804 |
tctttgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagta |
14524705 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| |||||||||||||||||||||| | |||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
14524704 |
ttggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttccaca |
14524605 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
14524604 |
ccatatt |
14524598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 5184 - 5493
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| || |||||||||||||| | |||||||||||||| ||||| | |||| ||| |||||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
5184 |
gtttgtaatagccacatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagg |
5283 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcacca |
214 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || |||||||||||||| ||| | |||| ||||| || ||| |||| |||||||||||| |
|
|
| T |
5284 |
gcattgctctcttcatggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcacca |
5383 |
T |
|
| Q |
215 |
atattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc |
314 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||| | ||| |||||||||||||| |
|
|
| T |
5384 |
atattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcc |
5483 |
T |
|
| Q |
315 |
acaccatatt |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
5484 |
tcaccatatt |
5493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 10683 - 10989
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||| ||| | |||||||| ||||| | ||||| |||||| ||||| |||||||||| |||| | |
|
|
| T |
10683 |
gtttgtaatggcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaag |
10782 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||| | ||||| || ||| ||||| || |||| | | || |
|
|
| T |
10783 |
tcattgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagta |
10882 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| |||||||||||||||||||||| | |||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
10883 |
ttggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttccaca |
10982 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
|||||| |
|
|
| T |
10983 |
tcatatt |
10989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 5828 - 6137
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| || |||||||||||||| | |||||||||||||| ||||| | |||| ||| |||||||||||| ||||| ||||||||||||| ||| |
|
|
| T |
5828 |
gtttgtaatagccacatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagg |
5927 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggt---tgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcacca |
214 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||| || |||||||||||||| ||| | |||| ||||| || ||| |||| |||||||||||| |
|
|
| T |
5928 |
gcattgctctcttcatggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcacca |
6027 |
T |
|
| Q |
215 |
atattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttcc |
314 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||| | ||| |||||||||||||| |
|
|
| T |
6028 |
atattggcctaaaaggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcc |
6127 |
T |
|
| Q |
315 |
acaccatatt |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
6128 |
tcaccatatt |
6137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 11326 - 11632
Alignment:
| Q |
18 |
gtttgtaattgcaacatcacctcatgctgcgacaaaaatccaaggtagcgaggctgatgctctgttgaagtggaaatcaagccttgacaaccatagcagg |
117 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||| ||| | |||||||| ||||| | ||||| |||||| ||||| |||||||||| |||| | |
|
|
| T |
11326 |
gtttgtaatggcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaag |
11425 |
T |
|
| Q |
118 |
gcatttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcaaagtccatcaacaaggtaaatctcaccaata |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||| | ||||| || ||| ||||| || |||| | | || |
|
|
| T |
11426 |
tcattgctctcttcatggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagta |
11525 |
T |
|
| Q |
218 |
ttggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccaca |
317 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||| |||||||||||||||||||||| | |||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
11526 |
ttggactaaaaggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttccaca |
11625 |
T |
|
| Q |
318 |
ccatatt |
324 |
Q |
| |
|
|||||| |
|
|
| T |
11626 |
tcatatt |
11632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 16023082 - 16023155
Alignment:
| Q |
199 |
aaggtaaatctcaccaatattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatcca |
272 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||||||||||| | ||||| || ||||||||||||||||| ||||| |
|
|
| T |
16023082 |
aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16023155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 16101174 - 16101247
Alignment:
| Q |
199 |
aaggtaaatctcaccaatattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatcca |
272 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||||||||||| | ||||| || ||||||||||||||||| ||||| |
|
|
| T |
16101174 |
aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16101247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 16170852 - 16170925
Alignment:
| Q |
199 |
aaggtaaatctcaccaatattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatcca |
272 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||||||||||| | ||||| || ||||||||||||||||| ||||| |
|
|
| T |
16170852 |
aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaatatcca |
16170925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 14603611 - 14603684
Alignment:
| Q |
199 |
aaggtaaatctcaccaatattggactaaaaggtacgcttcagagtctcaatttctcatcacttccaaaaatcca |
272 |
Q |
| |
|
||||||||||| || ||||| ||| | ||||||||||| | ||||| || ||||||||||||||||| ||||| |
|
|
| T |
14603611 |
aaggtaaatctgacaaatatgggattgaaaggtacgctcgaaagtcttaacttctcatcacttccaaatatcca |
14603684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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