View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_high_20 (Length: 252)
Name: NF20717_high_20
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_high_20 |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26915751 - 26915516
Alignment:
| Q |
1 |
tagcacagtggaagtgatccaagcaaatgctattgatatcaaattaacaaacgaattatttattaaataagcttatttttctttgcagcaatggattcag |
100 |
Q |
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| T |
26915751 |
tagcaccgtggaagtgatccaagcaaatgctattgatatcaaattaacaaacaaattatttattaaataagcttatttttctttgcagcaatggattcag |
26915652 |
T |
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| Q |
101 |
aaatggtaaagaagcttggaacatctctcttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaa |
200 |
Q |
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| T |
26915651 |
aaatggtaaagaagcttggaacatctctcttggttccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaa |
26915552 |
T |
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| Q |
201 |
tcaagaaccttctgtagtatctaacacaatctcttt |
236 |
Q |
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| T |
26915551 |
ccaagaaccttctgtagtatctagcacaatctcttt |
26915516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 21209074 - 21209283
Alignment:
| Q |
9 |
tggaagtgatccaagcaaatgctattgatatcaaattaacaaacgaattatttattaaataagcttatttttctttgcagcaatggattcagaaatggta |
108 |
Q |
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| T |
21209074 |
tggaagtgatccaagcaaatgctattgatatcaaattaacaaaagaactattaattgaataggcttatatttctttgcagcaatggattcagaaatggta |
21209173 |
T |
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| Q |
109 |
aagaagcttggaacatctctcttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaatcaagaac |
208 |
Q |
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| T |
21209174 |
aataagcttggaagctctctcttggtgccttctgtacaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaaccaagacc |
21209273 |
T |
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| Q |
209 |
cttctgtagt |
218 |
Q |
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| T |
21209274 |
cttctctagt |
21209283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 22985735 - 22985658
Alignment:
| Q |
117 |
tggaacatctctcttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttca |
194 |
Q |
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| T |
22985735 |
tggaacttctctcctggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttca |
22985658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 21347862 - 21347980
Alignment:
| Q |
118 |
ggaacatctctcttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaatcaagaaccttctgtag |
217 |
Q |
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| T |
21347862 |
ggaacctctctcctggttccttctgttcaagagttagtaaaacaacccattaccaatattccagaacgatatcttcatccaaatcaagaccctattgctg |
21347961 |
T |
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| Q |
218 |
tatctaacacaatctcttt |
236 |
Q |
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| T |
21347962 |
tttctaacacaagctcttt |
21347980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 23023290 - 23023214
Alignment:
| Q |
130 |
ttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaatcaaga |
206 |
Q |
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||||||||||||||||||||||| | |||||| |||| | | || ||||||||| |||| |||| | ||||||||| |
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| T |
23023290 |
ttggtgccttctgtccaagagcttgcaaagcagcccaacacagaaattccagaacaatatcttcatccaaatcaaga |
23023214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 235
Target Start/End: Complemental strand, 73978 - 73831
Alignment:
| Q |
91 |
atggattcagaaatggtaaagaagcttggaacatctctcttggtgccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatg |
190 |
Q |
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||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
73978 |
atggattcagacatggtgaagaatcttggaacctctctgacggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatc |
73879 |
T |
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| Q |
191 |
ttcagcaaaatcaagaaccttct---gtagtatctaacacaatctctt |
235 |
Q |
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|||||||||| ||||| |||||| || ||||||| ||||||||||| |
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| T |
73878 |
ttcagcaaaaccaagacccttctctagttgtatctagcacaatctctt |
73831 |
T |
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