View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20717_high_25 (Length: 203)

Name: NF20717_high_25
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20717_high_25
NF20717_high_25
[»] chr1 (24 HSPs)
chr1 (9-185)||(15001112-15001288)
chr1 (1-185)||(15009715-15009899)
chr1 (1-185)||(15030813-15030997)
chr1 (1-185)||(15023832-15024016)
chr1 (1-185)||(15031173-15031357)
chr1 (1-185)||(15009931-15010115)
chr1 (6-185)||(15031029-15031208)
chr1 (6-175)||(14533675-14533844)
chr1 (6-148)||(15036060-15036202)
chr1 (6-185)||(15016118-15016297)
chr1 (66-173)||(14523470-14523577)
chr1 (5-147)||(15024014-15024156)
chr1 (5-147)||(15031355-15031497)
chr1 (21-182)||(15024123-15024284)
chr1 (21-182)||(15031464-15031625)
chr1 (87-185)||(15036167-15036265)
chr1 (6-139)||(14533819-14533952)
chr1 (97-175)||(14533622-14533700)
chr1 (87-185)||(15024264-15024362)
chr1 (87-185)||(15031605-15031703)
chr1 (90-150)||(15010182-15010242)
chr1 (97-149)||(14503165-14503217)
chr1 (109-183)||(15016264-15016338)
chr1 (109-143)||(14481606-14481640)
[»] scaffold0400 (3 HSPs)
scaffold0400 (15-137)||(11686-11808)
scaffold0400 (15-147)||(11532-11664)
scaffold0400 (15-77)||(11890-11952)
[»] scaffold0365 (3 HSPs)
scaffold0365 (15-137)||(12329-12451)
scaffold0365 (15-147)||(12175-12307)
scaffold0365 (15-77)||(12533-12595)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 15001288 - 15001112
Alignment:
Q  9 aaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaa 108  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||    
T  15001288 aaggtaaatagtatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagtttcgttaaa 15001189  T
Q  109 tttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| |||||||||||||||||    
T  15001188 tttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacc 15001112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15009899 - 15009715
Alignment:
Q  1 tttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||| ||||||||||| |    
T  15009899 tttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagct 15009800  T
Q  101 tcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| |||||||||||||||||    
T  15009799 tcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacc 15009715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15030997 - 15030813
Alignment:
Q  1 tttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtt 100  Q
    ||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||| ||||||||||| |    
T  15030997 tttcttgaaaggtcaataatatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttgaataaaaatacaattcacttagct 15030898  T
Q  101 tcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| |||||||||||||||||    
T  15030897 tcgttaaatttccgatagtgaaaggaattggtccagagagagtattttgtgaaaggtcaatagtatctaaattaatcaaattacc 15030813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15024016 - 15023832
Alignment:
Q  1 tttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtt 100  Q
    |||||||| |||| ||||  |||| |||||||||||||||||| |||||||||||||| ||| | |||||||||||| | |||||| |||||||||||||    
T  15024016 tttcttgataggtgaataagatccaaattgatcaagttacctatggaaggtggaatttctccggagagagcatttgaataaaaatacaattcacttagtt 15023917  T
Q  101 tcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||    
T  15023916 tggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatactatccaaattaatcaaattacc 15023832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15031357 - 15031173
Alignment:
Q  1 tttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtt 100  Q
    |||||||| |||| ||||  |||| |||||||||||||||||| |||||||||||||| ||| | |||||||||||| | |||||| |||||||||||||    
T  15031357 tttcttgataggtgaataagatccaaattgatcaagttacctatggaaggtggaatttctccggagagagcatttgaataaaaatacaattcacttagtt 15031258  T
Q  101 tcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||| ||||| |||||    
T  15031257 tggttaaatttccgatagtgaaaggaattggtccagagagattattttgtgaaaggtcaatantatccaaattgatcaagttacc 15031173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15010115 - 15009931
Alignment:
Q  1 tttcttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtt 100  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | | || | |||||  ||| ||||    
T  15010115 tttcttgaaagggaaatattatccaaattgatcaagttacctacggaaggtggaatttgtccagtgagagcatttaaataaagagataatgtactgagtt 15010016  T
Q  101 tcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagt-atccaaattaatcaaattacc 185  Q
    | || |||||||| |||||| |||||||||||||||||||||||||||||  ||||  || ||| |||||||||||||||||||||    
T  15010015 ttgtcaaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg-gaaaagtaatccaaattaatcaaattacc 15009931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 15031208 - 15031029
Alignment:
Q  6 tgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgtt 105  Q
    |||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| | | || | |||||  ||| ||||| ||     
T  15031208 tgaaaggtcaatantatccaaattgatcaagttacctatggaaggtggaatttgtccagtgagagcatttaaataaagagataatgtactgagttttgtc 15031109  T
Q  106 aaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagt-atccaaattaatcaaattacc 185  Q
    |||||||| |||||| |||||||||||||||||||||||||||||  ||||  || ||| |||||||||||||||||||||    
T  15031108 aaatttccaatagtggaaggaattggtccagagagattattttgtgaaagg-gaaaagtaatccaaattaatcaaattacc 15031029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 14533675 - 14533844
Alignment:
Q  6 tgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgtt 105  Q
    ||||||||||||||||||| |||| | || |||||||| ||||||||||| |||||| |||||||||||||| | || | |||||  ||||| |||||||    
T  14533675 tgaaaggtaaatagtatccaaattaaccatgttacctatggaaggtggaagttgtccagtgagagcatttgaatgaagagataatatacttactttcgtt 14533774  T
Q  106 aaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaa 175  Q
    |||||||| | |||| |||||||||||| |||||| ||||||| |  |||||||| ||||||||||||||    
T  14533775 aaatttccaacagtggaaggaattggtctagagagtttattttctgaaaggtcaatagtatccaaattaa 14533844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 15036202 - 15036060
Alignment:
Q  6 tgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgtt 105  Q
    |||||||| ||||| |||| |||| ||||| ||||||| |||||||||||||| ||| |||||||||||||| | ||   |||||||||| | ||| |||    
T  15036202 tgaaaggtgaatagaatccaaattaatcaaattacctatggaaggtggaatttttccagtgagagcatttgagtaaattaataattcactcactttggtt 15036103  T
Q  106 aaatttccgatagtgaaaggaattggtccagagagattatttt 148  Q
    |||||||| |||||| ||||||||||||||||||| |||||||    
T  15036102 aaatttccaatagtggaaggaattggtccagagagtttatttt 15036060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 15016297 - 15016118
Alignment:
Q  6 tgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgtt 105  Q
    ||||||||||| ||||| | |||| || || ||| ||| | |||||||||||||||| |||||| ||||||| | || ||||| |  | | ||||| ||     
T  15016297 tgaaaggtaaagagtatgcaaattaattaaattatctatgaaaggtggaatttgtccggtgagatcatttgagtaaagatatagtatattgagttttgtc 15016198  T
Q  106 aaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    |||||||| ||||||||||||| ||||||||||| |||||||| |  ||||| || ||||||||||||||||||||||||    
T  15016197 aaatttcctatagtgaaaggaagtggtccagagatattattttctgaaaggttaatagtatccaaattaatcaaattacc 15016118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 14523470 - 14523577
Alignment:
Q  66 gagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagta 165  Q
    ||||||||||||   |||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||  || ||||| ||||    
T  14523470 gagagcatttgagagaaaagataattcacttactttcgttaaatttccgatagtggaaggaagtggtccagagagtttattttgtgaaaagtcaatagta 14523569  T
Q  166 tccaaatt 173  Q
    ||||||||    
T  14523570 tccaaatt 14523577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 15024156 - 15024014
Alignment:
Q  5 ttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgt 104  Q
    |||||||||||||||||||| |||| ||||| || |||| |||||||||||||||||| |  |||||||||||   || | |||||  ||  ||||| ||    
T  15024156 ttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtggaatttgtccagcaagagcatttgagaaaagagataatgtaccgagttttgt 15024057  T
Q  105 taaatttccgatagtgaaaggaattggtccagagagattattt 147  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||    
T  15024056 taaatttccgatggtggaaggaattggtccagagagatgattt 15024014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 15031497 - 15031355
Alignment:
Q  5 ttgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgt 104  Q
    |||||||||||||||||||| |||| ||||| || |||| |||||||||||||||||| |  |||||||||||   || | |||||  ||  ||||| ||    
T  15031497 ttgaaaggtaaatagtatccaaatttatcaaatttcctatggaaggtggaatttgtccagcaagagcatttgagaaaagagataatgtaccgagttttgt 15031398  T
Q  105 taaatttccgatagtgaaaggaattggtccagagagattattt 147  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||    
T  15031397 taaatttccgatggtggaaggaattggtccagagagatgattt 15031355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 15024284 - 15024123
Alignment:
Q  21 atccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtg 120  Q
    |||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||    ||| |  ||||| ||| | ||| ||||||||||||||  ||    
T  15024284 atccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcatttacgccaagagttaatttactcaattttgttaaatttccgatgatg 15024185  T
Q  121 aaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaatt 182  Q
     || |||||||||||||||||| ||||| |  ||||| || |||||||||||| ||||||||    
T  15024184 gaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatt 15024123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 15031625 - 15031464
Alignment:
Q  21 atccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccgatagtg 120  Q
    |||| |||| ||||| ||||||| |||||||||||||||||| ||||||||||||    ||| |  ||||| ||| | ||| ||||||||||||||  ||    
T  15031625 atccaaattaatcaaattacctatggaaggtggaatttgtccggtgagagcatttacgccaagagttaatttactcaattttgttaaatttccgatgatg 15031526  T
Q  121 aaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaatt 182  Q
     || |||||||||||||||||| ||||| |  ||||| || |||||||||||| ||||||||    
T  15031525 gaaagaattggtccagagagatgattttttgaaaggtaaatagtatccaaatttatcaaatt 15031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 15036265 - 15036167
Alignment:
Q  87 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    |||| |||| ||||| || |||||| |||||||| |||||||||||||||||||||||||| ||  ||||| || || |||||||||||||||||||||    
T  15036265 taatgcactgagttttgtcaaattttcgatagtggaaggaattggtccagagagattatttagtgaaaggtgaatagaatccaaattaatcaaattacc 15036167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 14533819 - 14533952
Alignment:
Q  6 tgaaaggtaaatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgtt 105  Q
    |||||||| |||||||||| |||| | || |||||||| |||||||||||||||||| ||||||||||||||   || ||||||  |  | ||||| ||     
T  14533819 tgaaaggtcaatagtatccaaattaaccaggttacctatggaaggtggaatttgtccggtgagagcatttgaggaaagatataacactgtgagttttgtc 14533918  T
Q  106 aaatttccgatagtgaaaggaattggtccagaga 139  Q
    ||||||||||||||  |||||| |||||||||||    
T  14533919 aaatttccgatagtagaaggaagtggtccagaga 14533952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 14533622 - 14533700
Alignment:
Q  97 agtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaa 175  Q
    ||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |  ||||| || ||||||||||||||    
T  14533622 agttttgtcaaatttccgatagtggaaggaattggtccagagagtttattttctgaaaggtaaatagtatccaaattaa 14533700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 15024362 - 15024264
Alignment:
Q  87 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    |||||| || ||||| || ||||||||||||||| | |||||||||||||||||||||||||||  ||||  ||    |||||||||||||||||||||    
T  15024362 taattcgctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacc 15024264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 15031703 - 15031605
Alignment:
Q  87 taattcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaattacc 185  Q
    |||||| || ||||| || ||||||||||||||| | |||||||||||||||||||||||||||  ||||  ||    |||||||||||||||||||||    
T  15031703 taattcgctaagttttgtcaaatttccgatagtggatggaattggtccagagagattattttgtgaaagggaaatgtaatccaaattaatcaaattacc 15031605  T

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Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 15010242 - 15010182
Alignment:
Q  90 ttcacttagtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttgt 150  Q
    |||||| ||||| || |||||||| |||||| |||||||||||||||||||||||||||||    
T  15010242 ttcactgagttttgtcaaatttccaatagtggaaggaattggtccagagagattattttgt 15010182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 14503217 - 14503165
Alignment:
Q  97 agtttcgttaaatttccgatagtgaaaggaattggtccagagagattattttg 149  Q
    |||||||| ||||||||||||||  ||||||||||||||||||| ||||||||    
T  14503217 agtttcgtcaaatttccgatagttgaaggaattggtccagagaggttattttg 14503165  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 15016338 - 15016264
Alignment:
Q  109 tttccgatagtgaaaggaattggtccagagagattattttgtccaaggtcaacagtatccaaattaatcaaatta 183  Q
    ||||| |||||||||||||||||| ||||||||||||| | |  ||||| || ||||| ||||||||| ||||||    
T  15016338 tttccaatagtgaaaggaattggttcagagagattattgtatgaaaggtaaagagtatgcaaattaattaaatta 15016264  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 14481640 - 14481606
Alignment:
Q  109 tttccgatagtgaaaggaattggtccagagagatt 143  Q
    |||||||||||| ||||||||||||||||||||||    
T  14481640 tttccgatagtggaaggaattggtccagagagatt 14481606  T

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Target: scaffold0400 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 11808 - 11686
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 114  Q
    ||||| |||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||||   || |  ||| ||| | ||||| || ||||||||     
T  11808 aatagaatccaaattgaccaagttacctatggaatgtggaatttgtccggtgagagcatttgagaaaagagttaactcagtgagttttgtcaaatttcct 11709  T
Q  115 atagtgaaaggaattggtccaga 137  Q
    |||||||||||||| ||||||||    
T  11708 atagtgaaaggaataggtccaga 11686  T

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Target: scaffold0400; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 11664 - 11532
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 114  Q
    |||||||||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||   || | ||||     | ||||| || |||||||||    
T  11664 aatagtatccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccg 11565  T
Q  115 atagtgaaaggaattggtccagagagattattt 147  Q
    ||||||  |||||||||||| ||||| ||||||    
T  11564 atagtggtaggaattggtcccgagagtttattt 11532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 11952 - 11890
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttga 77  Q
    ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||||||||    
T  11952 aatagaatccaagttgaccaagttaccaatggaaggtggaatttgtccggtgagagcatttga 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 12451 - 12329
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 114  Q
    ||||| |||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||||   || |  ||| ||| | ||||| || ||||||||     
T  12451 aatagaatccaaattgaccaagttacctatggaatgtggaatttgtccggtgagagcatttgagaaaagagttaactcagtgagttttgtcaaatttcct 12352  T
Q  115 atagtgaaaggaattggtccaga 137  Q
    |||||||||||||| ||||||||    
T  12351 atagtgaaaggaataggtccaga 12329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 12307 - 12175
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttgattcaaaatataattcacttagtttcgttaaatttccg 114  Q
    |||||||||| |||||| |||||||  || |||||||||||||||||| ||||||||||||||   || | ||||     | ||||| || |||||||||    
T  12307 aatagtatccaaattgaccaagttatatatggaaggtggaatttgtccggtgagagcatttgagaaaagagataacattgtgagttttgtcaaatttccg 12208  T
Q  115 atagtgaaaggaattggtccagagagattattt 147  Q
    ||||||  |||||||||||| ||||| ||||||    
T  12207 atagtggtaggaattggtcccgagagtttattt 12175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 12595 - 12533
Alignment:
Q  15 aatagtatccgaattgatcaagttacctagggaaggtggaatttgtcctgtgagagcatttga 77  Q
    ||||| |||| | |||| ||||||||| | |||||||||||||||||| ||||||||||||||    
T  12595 aatagaatccaagttgaccaagttaccaatggaaggtggaatttgtccggtgagagcatttga 12533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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