View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_high_4 (Length: 458)
Name: NF20717_high_4
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 32277367 - 32276937
Alignment:
| Q |
18 |
taaagtcatggacaaatgagtttcactgtgatggttataaagtttctatcctgttaagaatgcaatggaatgaatcacatttgcaattagtattttggtt |
117 |
Q |
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| T |
32277367 |
taaagtcatggacaaatgaatttcactgtgatggttataaagtttctatcctgttaagaatgcaatggaatgaatcacatttgcaattagtattttggtt |
32277268 |
T |
|
| Q |
118 |
cggtgcacttaggatataaagtataaactgctactaataactcggttatttgacagaatacacagggtggatcacttgggatagcttttgatgtaatctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32277267 |
cggtgcacttaggatataaagtataaactgctactaataactcggttatttgacagaatacacagggtggatcacttgggatagcttttgatgtaatctg |
32277168 |
T |
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| Q |
218 |
gtttgagcctgccacaaacactaaagaagacattgcagcagctcagagagctcaagattttcagctaggctggtaagtcatgaacttagtacctcagatt |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32277167 |
gtatgagcctgccacaaacactaaagaagacattgcagcagctcagagagctcaagattttcagctaggctggtaagtcatgcacttagtacctcagatt |
32277068 |
T |
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| Q |
318 |
gaaattttcacatcaaccgttaaagatcgttaataaaaagactacttacattttaaaacaaggcttaaggaagttattataagtcaatcttaattgttaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32277067 |
gaaattttcacatcaaccgttaaagatcgttaataaaaagactacttacattttaaaacaaggcttaaggaagttattataactcaatcttaattgttaa |
32276968 |
T |
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| Q |
418 |
atgtcttaatcacaggtttcttgatcctttg |
448 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
32276967 |
atgtcttaatcacaggtttcttgatcctttg |
32276937 |
T |
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