View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_high_8 (Length: 395)
Name: NF20717_high_8
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 5486670 - 5486851
Alignment:
| Q |
17 |
tctctggaattatatttgctcaaattacatgtcattgcttgatttttatatgcaaatacatccattcattgccgatatgcaaattttaagaaatttcaat |
116 |
Q |
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| T |
5486670 |
tctctggaattatatttgctcaaattacatgtcattgcttgatttttatatgcaaatacatccattcattgccgatatgcaaattttaagaaatttcaat |
5486769 |
T |
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| Q |
117 |
cggtacggtagtggagagttccacaccaacaaaactgagtagatcaatttcggtagtagaactgttaaattgaaatgaatgg |
198 |
Q |
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| T |
5486770 |
cggtacggtagtggagagttccacaccaacaaaactgagtagatcaatttcggtagtagaactgttaaattgaaacgaatgg |
5486851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 236 - 395
Target Start/End: Original strand, 5486896 - 5487055
Alignment:
| Q |
236 |
aggagatcaacatagctgatcaaggttacagagttactactgtccttttttgaatgcatcgtagttgctgtggctgaaatgcattttgcatcatataaat |
335 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5486896 |
aggagatcaacatagccgatcaaggttacagagttactactgtccttttttgaatgcatcatagtcgctgtggctgaaatgcattttgcatcatataaat |
5486995 |
T |
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| Q |
336 |
gtgctgaaattttgtgccttttttcagttacgagaaagaagaaatgaaggaatttgtcct |
395 |
Q |
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| T |
5486996 |
gtgctgaaattttgtgccttttttcagttacgagaaagaagaaatgaaggaatttgtcct |
5487055 |
T |
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