View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20717_low_1 (Length: 500)
Name: NF20717_low_1
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 226 - 462
Target Start/End: Complemental strand, 8355750 - 8355517
Alignment:
| Q |
226 |
tggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataattccccgattaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355750 |
tggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataattccccgattaa |
8355651 |
T |
|
| Q |
326 |
aattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaagt |
425 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8355650 |
aattctctatccaaacacacttttagtgtagtttttattc---tcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaaact |
8355554 |
T |
|
| Q |
426 |
cactatctttccagactagtggtggcgatctggaaca |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355553 |
cactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 8356335 - 8356487
Alignment:
| Q |
81 |
ctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt |
180 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8356335 |
ctcaacagctataagtaatgtaacaatgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt |
8356434 |
T |
|
| Q |
181 |
tttttgttttcaaattgtcactatgctattagctacctgcaagtatggaataa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8356435 |
tttttgttttcaaattgtcactatgctattagctacctgcaagtatggaataa |
8356487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 323 - 491
Target Start/End: Original strand, 8482621 - 8482788
Alignment:
| Q |
323 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
422 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
|
| Q |
423 |
agtcac-tatctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgt |
491 |
Q |
| |
|
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgt |
8482788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 8433167 - 8433316
Alignment:
| Q |
51 |
tgaacaaggctggaggacccgtacaatcagctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcacta |
150 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8433167 |
tgaacaaagctggaggacccttacaatcaactcaacagcta--agcaatgtaacaatgaatgaaaccatacgttggttttataacaaaactcactcacta |
8433264 |
T |
|
| Q |
151 |
tatttcacaaagttcctatgtgggacttgttttttgttttcaaattgtcact |
202 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8433265 |
tatttcacaaagttttgatgtgggacttcttttatgttttcaaattgtcact |
8433316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8356129 - 8356207
Alignment:
| Q |
1 |
caccctatataagttctcaacccccaacatagaagaaaacagtatactagtgaacaaggctggaggacccgtacaatca |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8356129 |
caccctatataagttctcaacccccaacatagaagaaaacagtatactagtgaacaaggctggaggaaccgtacaatca |
8356207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 8362239 - 8362292
Alignment:
| Q |
143 |
actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
196 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
8362239 |
actcactatatttcaaaaagttccgatgtgggactagttttttgttttcaaatt |
8362292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 8419317 - 8419380
Alignment:
| Q |
121 |
cgttggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt |
182 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
8419317 |
cgttggttttataacaaaacttactctcactatattttacaaagttccgatgtggggcttgttt |
8419380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 8406351 - 8406402
Alignment:
| Q |
145 |
tcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
196 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
8406351 |
tcactatatttcataaagttccaatgtgggacttattttttgttttgaaatt |
8406402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
352 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
420 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 8342901 - 8342961
Alignment:
| Q |
124 |
tggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt |
182 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8342901 |
tggttttatagcaaaacttactctcactaaatttcacaaagttccgatgtgggacttgttt |
8342961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 8415718 - 8415771
Alignment:
| Q |
143 |
actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
196 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
8415718 |
actcactatatttcataaagttccgatgtggggcttattttttgttttgaaatt |
8415771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 8407533 - 8407589
Alignment:
| Q |
140 |
ctcactcactatatttcacaaagttcctatgtgggactt-gttttttgttttcaaat |
195 |
Q |
| |
|
|||||| |||| |||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8407533 |
ctcactgactacatttcataaagttccgatgtgggacttatttttttgttttcaaat |
8407589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
375 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
423 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||||||||||||||||| |
|
|
| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University