View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20717_low_10 (Length: 373)
Name: NF20717_low_10
Description: NF20717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20717_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 79 - 353
Target Start/End: Original strand, 2813623 - 2813897
Alignment:
| Q |
79 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatataccaatgattattttaaatttcaaatcatatatt |
178 |
Q |
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| T |
2813623 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatatatccatgattattttaaatttcaaatcatatatt |
2813722 |
T |
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| Q |
179 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagcataattatta |
278 |
Q |
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| T |
2813723 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagtataattatta |
2813822 |
T |
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| Q |
279 |
ctgttgtatatttatgtatcatattaatcaataacatcaaaatatgaacaccagaaagatatgggaaacaaaggt |
353 |
Q |
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| T |
2813823 |
ctgttgtatatttatgtatcatattaatcaataacatcaaaatatgaaaaccagaaagatatgggaaacaaaggt |
2813897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2813510 - 2813549
Alignment:
| Q |
1 |
atgcagcaatgccaatggagacagatacttattcatccga |
40 |
Q |
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| T |
2813510 |
atgcagcaatgccaatggagacagatacttattcatccga |
2813549 |
T |
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